BAC Information

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BAC

Clone NameMSMg01-523O23
Chromosome7 (Build37)
Map Location 63,145,857 - 63,317,711
singlet/doubletdoublet
Overlap geneCyfip1, Nipa2, Nipa1, LOC672959, Herc2
Upstream geneLuzp2, LOC668796, Siglech, Tubgcp5
Downstream genep, LOC100040839, Gabrg3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523O23.T7 (MSMg01no523_o23.b1)MSMg01-523O23.TJ (MSMg01no523_o23.g1)
ACCAG594132AG594133
length757765
length of high quality
(start - end)		611 (47 - 657)562 (76 - 637)
definitionCHROMAT_FILE: MSMg01no523_o23.b1 PHD_FILE: MSMg01no523_o23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:01 2005CHROMAT_FILE: MSMg01no523_o23.g1 PHD_FILE: MSMg01no523_o23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,317,105 - 63,317,711)(63,145,857 - 63,146,418)
sequence
ACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTTTTTTCTGAGCCCCATTTTTTAATGGGGTTATCTGATT
TTCTGGAGTCCACGTTCTTCAGTTCTTTATATATATTAGATATTAGTCCC
CTATCTGATTTAGGGAAATTATTATTTTCTTAATGTTTAACTTCAAAGAG
TTTTTGCTATTTTGAAATTTTTAAAATATACTTAATAAATAAATAATAGA
CTTAGTTCAGTTTTAACTGCGGAGATTTATAATAATGCTGCAATTTAAGC
CAGTGTCCCTCAGAGGTCAGTTAAAGGCTTGGTCCTCAGAGAGCTACTAT
AGGAGAAAAGGCCTATGGTGATTGTTCTGGCTCAACCTGACCCAGGCTAA
AGTCATGTGAGAAATGGGAAATCACAATTGAGAAAATACCTCCATAACAC
TGGGCTGGAGGCAGGCATTTCCTTAACTAGTGAATCATGGGAGAGAGTCC
AGCTCATTGTAGGTGATGATATCTCTGGTCCTGAGCAGGCTGAGCAAGCT
ATAGGGAGCCAGCCAGTTGGCAGCAGTCTTCCATGGCCTCTACATCAGTT
CCTACCTTCAGGATCCTATCATGCTTTAGTTCTTGTCTTAACTTCCTTCA
ATGATGAACAGTGTTGTAGAAGTACAAGTCAAAAAGCCCTTTTTTGTGGT
AGTGTTTTATTACAGCATAAGAAACCTTAACTAAGACAGTGATCCTCACT
TAGCCAN

CAATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTAAAAGCATTTTGCTGTAACGTT
CTAAAGTTCTTGAGAGCTGAGGCAAAAAGTTTTTTTTATTTATTTTGATC
TTAGTTTGCTAATGTTGACTTCCAGATAACACATTACAAAATCACACAGT
CACTGTATCTCTATATACAGGTATGTATAGATGTAGGTTACAGAATGGCA
ACCATGAAGGTAAAGGAGGCTGCAGCCAAGTTCATGTAATTTCAAGAAAG
GAAGCTTGACTGGAGGCAAGCCTAAGGCTGATAGCAATGCAAAGGGCTCA
CCGTGGGCTCAGACAGTGAGCTAGAGGCAGTTCTGCAGTTTGTACTGCTG
AGTCACAGGTTTGAGCTGAGCCTCAGGGTTGACCAGAGCTGTAGAAGCAA
GGATCAGGACCATGGAGGATGCAGAACAGAGGACAGGAAAGTCTAGATTG
ATGAAGAGGCAGCAGTTCCAGATGGACAAATATATAGACAGGCAGATGAG
TAGGCTGTGGTAACCATGGAAACCAAGCTGGGCTAAAGCCCTGGGACAGC
TGAGCTTTCTGCCTATCTCTTGACACACATACTGAGTAGTCAGGTGACAG
GTGTAAGCAGGCTATCCCATGGTATAGTTATGTATCTGTAGGAGCATGGC
TCTATAGACTTATATGCCTATCAAGTATCTGAGTCCAGAGGCAAATGCTG
CTTGTAAAATGAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_o23.b1 MSMg01no523_o23.b1 CHROMAT_FILE:
MSMg01no523_o23.b1 PHD_FILE: MSMg01no523_o23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:01 2005
         (611 letters)



>mm_chr7_63316979_63317989
          Length = 1011

 Score = 1143 bits (591), Expect = 0.0
 Identities = 603/607 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttgtttttttctgagccccattttttaatggggttatctgattttctggagtc 64
           |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 gaattctttgtttagctctgagccccattttttaatggggttatctgattttctggagtc 674

                                                                       
Query: 65  cacgttcttcagttctttatatatattagatattagtcccctatctgatttagggaaatt 124
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 caccttcttcagttctttatatatattagatattagtcccctatctgatttagggaaatt 614

                                                                       
Query: 125 attattttcttaatgtttaacttcaaagagtttttgctattttgaaatttttaaaatata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 attattttcttaatgtttaacttcaaagagtttttgctattttgaaatttttaaaatata 554

                                                                       
Query: 185 cttaataaataaataatagacttagttcagttttaactgcggagatttataataatgctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cttaataaataaataatagacttagttcagttttaactgcggagatttataataatgctg 494

                                                                       
Query: 245 caatttaagccagtgtccctcagaggtcagttaaaggcttggtcctcagagagctactat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 caatttaagccagtgtccctcagaggtcagttaaaggcttggtcctcagagagctactat 434

                                                                       
Query: 305 aggagaaaaggcctatggtgattgttctggctcaacctgacccaggctaaagtcatgtga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 aggagaaaaggcctatggtgattgttctggctcaacctgacccaggctaaagtcatgtga 374

                                                                       
Query: 365 gaaatgggaaatcacaattgagaaaatacctccataacactgggctggaggcaggcattt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gaaatgggaaatcacaattgagaaaatacctccataacactgggctggaggcaggcattt 314

                                                                       
Query: 425 ccttaactagtgaatcatgggagagagtccagctcattgtaggtgatgatatctctggtc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ccttaactagtgaatcatgggagagagtccagctcattgtaggtgatgatatctctggtc 254

                                                                       
Query: 485 ctgagcaggctgagcaagctatagggagccagccagttggcagcagtcttccatggcctc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ctgagcaggctgagcaagctatagggagccagccagttggcagcagtcttccatggcctc 194

                                                                       
Query: 545 tacatcagttcctaccttcaggatcctatcatgctttagttcttgtcttaacttccttca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 tacatcagttcctaccttcaggatcctatcatgctttagttcttgtcttaacttccttca 134

                  
Query: 605 atgatga 611
           |||||||
Sbjct: 133 atgatga 127


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space:   601601
Effective search space used:   601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no523_o23.g1 MSMg01no523_o23.g1 CHROMAT_FILE:
MSMg01no523_o23.g1 PHD_FILE: MSMg01no523_o23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:01 2005
         (562 letters)



>mm_chr7_63145657_63146618
          Length = 962

 Score = 1064 bits (550), Expect = 0.0
 Identities = 559/562 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaaaagcattttgctgtaacgttctaaagttcttgagagctgaggcaaaaagtttttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaaaagcattttgctgtaacgttctaaagttcttgagagctgaggcaaaaagtttttt 260

                                                                       
Query: 61  ttatttattttgatcttagtttgctaatgttgacttccagataacacattacaaaatcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatttattttgatcttagtttgctaatgttgacttccagataacacattacaaaatcac 320

                                                                       
Query: 121 acagtcactgtatctctatatacaggtatgtatagatgtaggttacagaatggcaaccat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagtcactgtatctctatatacaggtatgtatagatgtaggttacagaatggcaaccat 380

                                                                       
Query: 181 gaaggtaaaggaggctgcagccaagttcatgtaatttcaagaaaggaagcttgactggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaggtaaaggaggctgcagccaagttcatgtaatttcaagaaaggaagcttgactggag 440

                                                                       
Query: 241 gcaagcctaaggctgatagcaatgcaaagggctcaccgtgggctcagacagtgagctaga 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 gcaagcctaaggctgatagcaatgcaaagggctcaccatgggctcagacagtgagctaga 500

                                                                       
Query: 301 ggcagttctgcagtttgtactgctgagtcacaggtttgagctgagcctcagggttgacca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggcagttctgcagtttgtactgctgagtcacaggtttgagctgagcctcagggttgacca 560

                                                                       
Query: 361 gagctgtagaagcaaggatcaggaccatggaggatgcagaacagaggacaggaaagtcta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagctgtagaagcaaggatcaggaccatggaggatgcagaacagaggacaggaaagtcta 620

                                                                       
Query: 421 gattgatgaagaggcagcagttccagatggacaaatatatagacaggcagatgagtaggc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gattgatgaagaggcagcagttccagatggacaaatatatagacaggcagatgagtaggc 680

                                                                       
Query: 481 tgtggtaaccatggaaaccaagctgggctaaagccctgggacagctgagctttctgccta 540
           ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtagtaaccatggagaccaagctgggctaaagccctgggacagctgagctttctgccta 740

                                 
Query: 541 tctcttgacacacatactgagt 562
           ||||||||||||||||||||||
Sbjct: 741 tctcttgacacacatactgagt 762


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space:   525504
Effective search space used:   525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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