BAC Information

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BAC

Clone NameMSMg01-525J14
Chromosome7 (Build37)
Map Location 116,549,859 - 116,550,470
singlet/doubletsinglet
Overlap geneStk33, EG668320
Upstream geneOlfr496-ps1, Olfr497, Olfr498, Olfr499-ps1, Olfr500-ps1, Olfr501-ps1, Olfr502, LOC269980, Olfr503, Olfr504, Olfr505-ps1, Olfr506, Olfr507, Olfr508, Olfr509, Olfr510, Olfr511-ps1, Olfr512, Olfr513, Olfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518, Olfr519, Nlrp10, Eif3s5, BC049265, Tub, Ric3, Lmo1
Downstream gene1700095J03Rik, Trim66, Rpl27a, St5, LOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5, Rab6ip1, Tmem41b, Ipo7, AA474408, Zfp143, Wee1, Swap70, EG668368, Sbf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525J14.T7 (MSMg01no525_j14.b1)MSMg01-525J14.TJ (MSMg01no525_j14.g1)
ACCAG595396AG595397
length753761
length of high quality
(start - end)		636 (31 - 666)619 (67 - 685)
definitionCHROMAT_FILE: MSMg01no525_j14.b1 PHD_FILE: MSMg01no525_j14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:16 2005CHROMAT_FILE: MSMg01no525_j14.g1 PHD_FILE: MSMg01no525_j14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGCCGCTATACGACTCCTATTTCGAGAGGATCCGCGGAATTCTTTGTGT
TTCACTGGGTCTGAGTCAGCCCCCACTTCCTCTCACCCTTTCTTCTAAGT
GATGATTTAGGTTAAAAAAATTGCATTGAATGTTGAAGTTCTTGTAGCAG
TTCTGACATGGTATTCTTGGATCAAGGATCCATAACTCTATAATCACTGT
CTTTATAGCAAACCCACAACGCTTGCTTTCTACCTCAGTCTGTTCCTTAT
TCTAGCTCATGCTGGTTGCACTGTGAGCTATCTCCACTAAGACTTGGGTG
ATAGAAAAGCACACTGTGACATGAACATTTGCTTTACTGTTTCCTTTGTA
GAAGCCCAGGGTTTCACTCTCAGTTTATCACATAGGAGTTTGGCTTTGAG
TTGAAATGCAAGGTTTCTGTAAATTTTCACTTTGAAATAAAGTATCTCTA
CTCAAGCACATACAGCAAAGGGGAGCCATAGCTCTTCTTCATTAATCCCT
CTCCCAGGAGGATCTCACGATTTAAGGTCAAGGCTGGCCTCTACATCATG
ATCTTCCTCCATTTCCAGCCATTTATTCATTGTTAGTAGAACAAATATTT
ATTAAGTTCCTGCTCTAAGTTCCATCATTTTAGACTCTGGAGAGAATCAT
GATGTGCAAAAACACAGTTCCTCTCTATAATCTAGTAAAGGACACAGACT
TCAATTAATTAGTGACCAAATTATCTAACTACCAATTGTATAAGTGCCTT
GAA

GGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACC
TGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACA
ACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTC
AGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCC
ATTGTTGGTGGGATTGCAGGCTTGTACAACCACTTTGGAAATCAGTCTGG
CGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACC
TCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACAT
GCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAA
GAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACAT
CTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAAT
TCCTAGCCAAATGGATGAACCTGGAGGGCATCATCCTGAGTGAGGTAACA
CATTCACAAAGGAACTCATACAATATGTACTCACTGATAAGTGGATATTA
GCCCCAAACCTAGGATACCCAAGATATAAGATACAATTTGCTAAACACAT
GAAACTCCAGAAAAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTA
GAATTGGGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_j14.b1 MSMg01no525_j14.b1 CHROMAT_FILE:
MSMg01no525_j14.b1 PHD_FILE: MSMg01no525_j14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:16 2005
         (636 letters)



>mm_chr7_116549635_116550670
          Length = 1036

 Score = 1160 bits (600), Expect = 0.0
 Identities = 609/612 (99%)
 Strand = Plus / Minus

                                                                       
Query: 25  ctgggtctgagtcagcccccacttcctctcaccctttcttctaagtgatgatttaggtta 84
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 ctgggtctgagtcagcccccacttcctctcaccctttcttctaagtgatgatttaggtta 777

                                                                       
Query: 85  aaaaaattgcattgaatgttgaagttcttgtagcagttctgacatggtattcttggatca 144
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 776 aaaaaattgcattgaatgttgaagttcttgtagcggttctgacatggtattcttggatca 717

                                                                       
Query: 145 aggatccataactctataatcactgtctttatagcaaacccacaacgcttgctttctacc 204
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 aggatccataactctataatcactgtctttatagcaaacccacaacgcttgctttctacc 657

                                                                       
Query: 205 tcagtctgttccttattctagctcatgctggttgcactgtgagctatctccactaagact 264
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 tcagtctgttccttattctagctcatgctggttgcactgtgagctatctccactaagact 597

                                                                       
Query: 265 tgggtgatagaaaagcacactgtgacatgaacatttgctttactgtttcctttgtagaag 324
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 596 tgggtgatagaaaagcacactgtgacatgaacatttgctttactgtttcatttgtagaag 537

                                                                       
Query: 325 cccagggtttcactctcagtttatcacataggagtttggctttgagttgaaatgcaaggt 384
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 cccagggtttcactctcagtttatcacataggagtttggctttgagttgaaatgcaaggt 477

                                                                       
Query: 385 ttctgtaaattttcactttgaaataaagtatctctactcaagcacatacagcaaagggga 444
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ttctgtaaattttcactttgaaataaagtatctctactcaagcacatacagcaaagggga 417

                                                                       
Query: 445 gccatagctcttcttcattaatccctctcccaggaggatctcacgatttaaggtcaaggc 504
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tccatagctcttcttcattaatccctctcccaggaggatctcacgatttaaggtcaaggc 357

                                                                       
Query: 505 tggcctctacatcatgatcttcctccatttccagccatttattcattgttagtagaacaa 564
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tggcctctacatcatgatcttcctccatttccagccatttattcattgttagtagaacaa 297

                                                                       
Query: 565 atatttattaagttcctgctctaagttccatcattttagactctggagagaatcatgatg 624
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 atatttattaagttcctgctctaagttccatcattttagactctggagagaatcatgatg 237

                       
Query: 625 tgcaaaaacaca 636
           ||||||||||||
Sbjct: 236 tgcaaaaacaca 225


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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