Query= MSMg01no525_j17.b1 MSMg01no525_j17.b1 CHROMAT_FILE:
MSMg01no525_j17.b1 PHD_FILE: MSMg01no525_j17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:17 2005
(718 letters)
>mm_chr7_145579499_145580616
Length = 1118
Score = 1141 bits (590), Expect = 0.0
Identities = 693/740 (93%), Gaps = 28/740 (3%)
Strand = Plus / Plus
Query: 4 ggaattcttttccgttctagtttatctgggatggtacttcacctcaggttctgcttgttt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 ggaattcttttccgttctagtttatctgggatggtacttcacctcaggttctgcttgttt 241
Query: 64 tttattggtttttaagttgtagatggagagatctttaacgatatggagtccttcaaatat 123
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 242 tttattggtttttaagttgtagatggagagatctttaccgatatggagtccttcaaatgt 301
Query: 124 attgcttcctcagggcaataaaactcgtg---------tc-----tct--tc-gag--at 164
|| |||||||||||||||||||||| || || ||| || | | ||
Sbjct: 302 atcacttcctcagggcaataaaactcatgagatttttatctttgttcttgtctgtgtaat 361
Query: 165 ctg-cttctagtctgtctcttcgagacctgcttcta-----gtcttttccttgcaagttt 218
|| ||| | ||| ||||||||||||||||||| | |||| |||||| |||||||
Sbjct: 362 gtgtctt-t--tctctctcttcgagacctgcttcgagacctgtctgttccttacaagttt 418
Query: 219 gactctgacttgtcgagtgctcagtcagtttctgtctcgttttcctttgctcttttccag 278
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 419 gactctgacttgttgagtgctcagtcagtttctgtctctttttcctttgctcttttccag 478
Query: 279 ttgggttggctgagagtcttgaatctacagtttgacaacagagtttatttttgtatcacc 338
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ttcggttggctgagagtcttgaatctacagtttgacaacagagtttatttttgtatcacc 538
Query: 339 tttgctcattatctctccaaatgctttccctgccatgtgttcttctaggacttcaatcac 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tttgctcattatctctccaaatgctttccctgccatgtgttcttctaggacttcaatcac 598
Query: 399 acatatgttaaccatctgatgttacctctcagctcggaggatgcgggctccatttcacca 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 acatatgttaaccatctgatgttacctctcagctcggaggatgcgggctccatttcacca 658
Query: 459 ctcacttgctctctgaaatgcaatctccagggtttctatcctttaaccccttccttgact 518
||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 659 ctcgcttgctctctgaaatgcaatcgccagagtttctatcctttaaccccttccttgact 718
Query: 519 tctccacatctactcgtgagcccatcaaagcccctttccatctcagatgttatagtcttc 578
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 tctccacatctactcatgagcccatcaaagcccctttccatctcagatgttatagtcttc 778
Query: 579 ttaatatttccatgacttcatttgcacatctctgatgaaatcctacacctgttcctccat 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 ttaatatttccatgacttcatttgcacatctctgatgaaatcctacacctgttcctccat 838
Query: 639 caggtgattaacctgctcgtcagtggggtactgagagtttcagtctgcaggtctctggct 698
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 caggtgattaacctgcttgtcagtggggtactgagagtttcagtctgcaggtctctggct 898
Query: 699 ctcctgatcgtttcttgata 718
||||||||||||||||||||
Sbjct: 899 ctcctgatcgtttcttgata 918
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 718
Length of database: 1118
Length adjustment: 10
Effective length of query: 708
Effective length of database: 1108
Effective search space: 784464
Effective search space used: 784464
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no525_j17.g1 MSMg01no525_j17.g1 CHROMAT_FILE:
MSMg01no525_j17.g1 PHD_FILE: MSMg01no525_j17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:17 2005
(645 letters)
>mm_chr7_145740366_145741410
Length = 1045
Score = 1224 bits (633), Expect = 0.0
Identities = 642/645 (99%)
Strand = Plus / Minus
Query: 1 tttctcgccatgagtagactttccctgaaaattagcactgagttttactgtgggtgggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 tttctcgccatgagtagactttccctgaaaattagcactgagttttactgtgggtgggga 786
Query: 61 ccaaggggaatttacccagtgtgtccatacaaaatgctctggactgggttgagactgaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 ccaaggggaatttacccagtgtgtccatacaaaatgctctggactgggttgagactgaat 726
Query: 121 ccgtagttgtgggctgaggtgtgtgagagagactacctctgtgagaacccgtgtgtgccc 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 725 ccgtagttgtgggctgaggtgtgtgagagagactacctctgtgagaacccatgtgtgccc 666
Query: 181 caggccttgtgtttgaaggtgtacagctcttggactgctcctgagcctgagccagaggtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 caggccttgtgtttgaaggtgtacagctcttggactgctcctgagcctgagccagaggtt 606
Query: 241 atagcccctcagacctgtgaggagcttctgtccacagaaacagtgggacctgtgcacctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 atagcccctcagacctgtgaggagcttctgtccacagaaacagtgggacctgtgcacctt 546
Query: 301 tgctgaggtgacaactctctaagactaggacttcccgtcatccaagttagagccccgtgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tgctgaggtgacaactctctaagactaggacttcccgtcatccaagttagagccccgtgg 486
Query: 361 aattacactcaactcatatttgcatggaagtagagataccaaagataccaaaaaaataag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aattacactcaactcatatttgcatggaagtagagataccaaagataccaaaaaaataag 426
Query: 421 acataaatctccagttcatgtctctataaactatttccttcagctaggtttcactttcta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 acataaatctccagttcatgtctctataaactatttccttcagctaggtttcactttcta 366
Query: 481 atcccctcccaaactttctaatttctgtcacctctcaatatattattgggaggattaact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 atcccctcccaaactttctaatttctgtcacctctcaatatattattgggaggattaact 306
Query: 541 cacagaggagcccagagccctcaggttcaaatcactacagccaatccccagctctgaaca 600
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 305 cacagaggagcccagagccctcaggttcaaatcactacagccaacccccagctctgaaca 246
Query: 601 cagctgcaatgggaattggaccttctgcatacaatcctctaaggg 645
|||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 245 cagctgcaatgggaattggaccttctgcatacaatcctctgaggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space: 657225
Effective search space used: 657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
