BAC Information

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BAC

Clone NameMSMg01-525N16
Chromosome7 (Build37)
Map Location 65,603,014 - 65,603,637
singlet/doubletsinglet
Overlap genenone
Upstream geneGabrg3, Gabra5, Gabrb3, EG668807, LOC434189
Downstream geneAtp10a, LOC621446, LOC668811, LOC668813, LOC668815, EG668818, Ube3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525N16.T7 (MSMg01no525_n16.b1)MSMg01-525N16.TJ (MSMg01no525_n16.g1)
ACCAG595590AG595591
length767769
length of high quality
(start - end)
635 (30 - 664)624 (67 - 690)
definitionCHROMAT_FILE: MSMg01no525_n16.b1 PHD_FILE: MSMg01no525_n16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:36 2005CHROMAT_FILE: MSMg01no525_n16.g1 PHD_FILE: MSMg01no525_n16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCATAAA
ATTCTTAGGCAAATGGATGAAACTAGAAAATATCATCCTGAGTGAGGTGA
CCCAGTCACAAAAGAACACATATGGTATGCACTCACTGGTAAGTGGATAT
TAGCCCAAAAGCTTGGGATATCCAAGATACAATTCACAGACCACATAAAG
CTCAAGAAAAAGGAAGATCAAAGTGTGGATGCTTCAGTCCTTCTTAGAAG
GGGGAACAGAATACTCAAGGGAGGACATACGGGGACAAATCATGGAACCA
AGACTGAAGGAAAGGCCATCCAGAGACTGCCCCACCTGGGGATACATCCC
ATATACAGACACACCAAATCCAGACACTATTGCAGATGTCAAGAAGTCCC
TCCTGACAGGAGCCTGATAGAGCTGTCTCCTGAGAGGCTCTGCCAGAGCC
TGAGAAATACAGAGGCAAATGCTTGTAGCCAACCATTGGACTGAGCACAG
GGTCCCCAATGGAGGAGTTAGAGAAAGTACTGAAGGAGCTGAAGAGGTTT
TTAACCCATAGGATGAACAATAATATCAACCAACCAGACACTCCAGAGCT
CCCAGTGACTAAACCACCAATCAATGAGTACACATGGATCGATCCATAGC
TCCAGCTGCATATGTAGCAGAGCATGGCCTTGTCATGCATCATTAGGAAG
AGAGATCCTTGGTCCTATGAAGGCTCATGGCCCATTGTAAGGGAAAGTCA
AGGGGGGGAGGCAGGAT
TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCATGACATATTCAAACTTGATTTACTTGCTTTTA
GATGAAGACACAGACATACATTTTCTCATTTAGAGGATTAGGTAGAGAAA
GACCATTTCCTGTCCTTTCCTTTCCCAGAATCATTTATCTTTCAAGCTGC
TACAGATTTCTACTGCACGATGGCAGCTGCTGTAAGAAATGGGGAGGGTG
TGGGGCCTCACATAGTGCCACGTTTCATCTCTCATCTGGCTATCTTTATC
CACTCACAGATCTGAGCCTTTAATAATGCCTTACTATGCTCAAATCCTTC
ACACAGGAATGAGGTAGGAGAGTTGAATGGTTTCTTTCCTCCCTCCTATC
TATGTACAGTCTGCGTGTACGTGCATACATGTGTGTATGTTTTTATGTCA
GAGGTTGACATCAAATAGTTTTGATAGCCTTATTTTGTGAGATATTCTCT
GAGCCTAGACTTCACTGATCACCCAGGGAGGTCCAGATATCTGACTATGT
CAGGTCCCACTGTATAGGGATAAAGGCACAGGAATACATTTGAACTTTTT
GATAACACAGGTGCTAGGGATCCAGAGTTATGTCCTCATGTTGTAGAGCC
AAGCTAAGCCATATTCTCAACTCCCAGTTTCTCTTTGTGATATAAAGACA
TAAACATATGGGGAGCTAATGGATTTTCTGAATTCTCTTGGCNTAGTCAT
GACACAGGAATGATTACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_n16.g1 MSMg01no525_n16.g1 CHROMAT_FILE:
MSMg01no525_n16.g1 PHD_FILE: MSMg01no525_n16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:36 2005
         (624 letters)



>mm_chr7_65602814_65603837
          Length = 1024

 Score = 1199 bits (620), Expect = 0.0
 Identities = 623/624 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgacatattcaaacttgatttacttgcttttagatgaagacacagacatacattttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 catgacatattcaaacttgatttacttgcttttagatgaagacacagacatacattttct 765

                                                                       
Query: 61  catttagaggattaggtagagaaagaccatttcctgtcctttcctttcccagaatcattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 catttagaggattaggtagagaaagaccatttcctgtcctttcctttcccagaatcattt 705

                                                                       
Query: 121 atctttcaagctgctacagatttctactgcacgatggcagctgctgtaagaaatggggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 atctttcaagctgctacagatttctactgcacgatggcagctgctgtaagaaatggggag 645

                                                                       
Query: 181 ggtgtggggcctcacatagtgccacgtttcatctctcatctggctatctttatccactca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 644 ggtgtggggcctcacatagtgccacgtttcatctctcatctggctatctttatccgctca 585

                                                                       
Query: 241 cagatctgagcctttaataatgccttactatgctcaaatccttcacacaggaatgaggta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 cagatctgagcctttaataatgccttactatgctcaaatccttcacacaggaatgaggta 525

                                                                       
Query: 301 ggagagttgaatggtttctttcctccctcctatctatgtacagtctgcgtgtacgtgcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ggagagttgaatggtttctttcctccctcctatctatgtacagtctgcgtgtacgtgcat 465

                                                                       
Query: 361 acatgtgtgtatgtttttatgtcagaggttgacatcaaatagttttgatagccttatttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 acatgtgtgtatgtttttatgtcagaggttgacatcaaatagttttgatagccttatttt 405

                                                                       
Query: 421 gtgagatattctctgagcctagacttcactgatcacccagggaggtccagatatctgact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gtgagatattctctgagcctagacttcactgatcacccagggaggtccagatatctgact 345

                                                                       
Query: 481 atgtcaggtcccactgtatagggataaaggcacaggaatacatttgaactttttgataac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 atgtcaggtcccactgtatagggataaaggcacaggaatacatttgaactttttgataac 285

                                                                       
Query: 541 acaggtgctagggatccagagttatgtcctcatgttgtagagccaagctaagccatattc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 acaggtgctagggatccagagttatgtcctcatgttgtagagccaagctaagccatattc 225

                                   
Query: 601 tcaactcccagtttctctttgtga 624
           ||||||||||||||||||||||||
Sbjct: 224 tcaactcccagtttctctttgtga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space:   622596
Effective search space used:   622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)