Query= MSMg01no526_i19.b1 MSMg01no526_i19.b1 CHROMAT_FILE:
MSMg01no526_i19.b1 PHD_FILE: MSMg01no526_i19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:30 2005
(546 letters)
>mm_chr7_144145478_144146423
Length = 946
Score = 822 bits (425), Expect = 0.0
Identities = 469/485 (96%), Gaps = 4/485 (0%)
Strand = Plus / Minus
Query: 1 acagaggcctttgcaaggcttgagcacgaaccttccagagagttctagatcttgtctggg 60
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 483 acagaggcctttgcaaggcttgagtatgaaccttccagagagttctagatcttgtctggg 424
Query: 61 atgctctctg--caggacaggatgcttttgccaacgctcactgaaccttctgtctgaaat 118
|||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 423 atgctctctgcacag--caggatgcttttgccaacgctcactgacccttctgtctgaaat 366
Query: 119 ctaaatgtcactgtgaagttttttaaccgcagctttttaagctgacaagatagaaatggt 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ctaaatgtcactgtgaagttttttaaccgcagctttttaagctgacaagatagaaatggt 306
Query: 179 taattctgagtcaacgaggtcggaaacgcctcatcagatcagctctacacgtgcacaggc 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aaattctgagtcaacgaggtcggaaacgcctcatcagatcagctctacacgtgcacaggc 246
Query: 239 tgccgactgcctccctgtcagctactgttctggcctaggcctatggagcttattctgacc 298
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 245 tgccgactgcctccctgtcagctaccgttctggcctaggcctatggagcttattctgacc 186
Query: 299 cacggttcaggcgtacagaccatctaggcagaggtggtgtggctggcagcaggggcttgt 358
||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 185 cacggttcaggcgtaaagaccatctaggcagaggtgctgtggctggcagcaggggcttga 126
Query: 359 ccggctcacactgcgtcctccgccagggagggagcagaggcgggtaaatgcaggtgctca 418
|| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 125 cctgctcacactgcgtcctccgccagcgagggaacagaggcgggtaaatgcaggtgctca 66
Query: 419 gcgctcttactccagtgtattcagtccaggatcccagccagggaatcatgctacccgcat 478
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 gagctcttactccagtgtattcagtccaggatcccagccagggaatcatgctacccgcat 6
Query: 479 tcagg 483
|||||
Sbjct: 5 tcagg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no526_i19.g1 MSMg01no526_i19.g1 CHROMAT_FILE:
MSMg01no526_i19.g1 PHD_FILE: MSMg01no526_i19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:30 2005
(579 letters)
>mm_chr7_143947167_143948143
Length = 977
Score = 1077 bits (557), Expect = 0.0
Identities = 573/579 (98%), Gaps = 2/579 (0%)
Strand = Plus / Plus
Query: 1 aacgcagatgatgtattgaacacacttggctctgtgtatatgaggtccagacacacctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacgcagatgatgtattgaacacacttggctctgtgtatatgaggtccagacacacctga 260
Query: 61 aaaagagtgcctctcctgtcacatcagcccaggcagcatcaacacacattgtttccagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaagagtgcctctcctgtcacatcagcccaggcagcatcaacacacattgtttccagaa 320
Query: 121 atgggggcagggggacaaccaagatcttgtctttcccaaagaaggtccctattaatatat 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 atgggggcagggggacaaccaagatcttgtctttcccaaggaaggtccctattaatatat 380
Query: 181 acctgtgcacattcctatcattgagactagtaagactgcagtgaggaaactaagttggct 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 acctgtgcacattcctatcattgagactagtaagactgtagtgaggaaactaagttggct 440
Query: 241 attagctagtacgtcccctgccaagagccataatctgacacagattgagctgggtgtagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attagctagtacgtcccctgccaagagccataatctgacacagattgagctgggtgtagc 500
Query: 301 agtccattaatggttcacggctcatgcaataatgaccaactaagctgacgtagtgttgct 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 501 agtccattaatggttcacggctcatgcaataatgaccgactaagctgacgtagtgttgct 560
Query: 361 ctcagattctgctgtcccgagggatgccactgtcactgagttatctattgcctgcttccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcagattctgctgtcccgagggatgccactgtcactgagttatctattgcctgcttccc 620
Query: 421 tatcaaagaaaaaaaaaaaaggcagagccgcaatgtatggacgcctctctgtagttcatt 480
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatcaaagaaaaaaaaaa--ggcagagccgcaatgtatggacgcctctctgtagttcatt 678
Query: 481 tcacacaaccctggcaacgggaggaacaatagatttataagtttatcctacattaaacca 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 679 tcacacaaccctggcaacgggaggaacaatagatttataagtttatcctacattaagcca 738
Query: 541 agcatgcctggctgcactgtaaattactaaataataaac 579
|||||||||||||||||||||||||||||||||||||||
Sbjct: 739 agcatgcctggctgcactgtaaattactaaataataaac 777
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 977
Length adjustment: 10
Effective length of query: 569
Effective length of database: 967
Effective search space: 550223
Effective search space used: 550223
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
