BAC Information

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BAC

Clone NameMSMg01-526M10
Chromosome7 (Build37)
Map Location 14,998,548 - 14,999,110
singlet/doubletsinglet
Overlap gene2810007J24Rik
Upstream geneLOC666232, Gm767, LOC666243, 9230107M04Rik, EG666256, LOC666267, LOC100042624, LOC100043194, Sult2a1, EG620627, EG434121, EG629203, LOC677512, EG629219, EG434123
Downstream geneEG638251, B430211C08Rik, EG194588, LOC666352, EG666312, LOC666365, LOC671978, LOC100042677, LOC100042685, EG666381, LOC100042691, LOC100042702, LOC100042707, LOC100042711, LOC100042714, LOC100042717, LOC100042721, LOC100042728, LOC100042731, LOC100042735, LOC100042739, LOC100042742, LOC235841, EG666407, LOC666337, Obox2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526M10.T7 (MSMg01no526_m10.b1)MSMg01-526M10.TJ (MSMg01no526_m10.g1)
ACCAG596287AG596288
length728733
length of high quality
(start - end)
529 (35 - 563)567 (66 - 632)
definitionCHROMAT_FILE: MSMg01no526_m10.b1 PHD_FILE: MSMg01no526_m10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:48 2005CHROMAT_FILE: MSMg01no526_m10.g1 PHD_FILE: MSMg01no526_m10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGCT
TAGCTCAGAGCCCCATTTTTAATAGGGTTATGTGATTTTCTGGAGTCCAC
CTTCTTGAGTACTTTATATGTATTGGATATTAGACCCCTATCTGATTTAG
GATAGGTAAAGAACTTTTCCCAATCTGTTGGTGGCCTTTTCGTCTTATTA
ACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAATTTTATGAGGTCCCATTT
GTAGATTCTTGATCTTACAGCACATGACATTGCTGTTCTATTCAGGAATT
TTTCCCCTGTACCCATATCTTCGAGGCTTTTCCCTACTTTCTCCTCTAAA
GTTTCATTGTCTCTGGTTTTATGTGGAGTTCCTTAATCCACTTAGATTTG
ACCTTAGTACAAGGAGATAGGAATGGATCAATTCCCATTCTTCTACTAGA
TAACCAACAGTTGTGCCAGGACCATTTGTTTAAAATGCTGTCTTTTTTCC
ACTGGATGGTTTTTGCTGCCTTGTCAAAATCAAGTGAGCATAGGTGTGTG
GGGTCATTTCTGGGTCTTCAATTCTTTTTTTTTTTTAAATTTATCTACCC
TTTTTTAAAAATATTTTTTATTATTACGTATTTTCCTCAATTACATTTAG
AATGCTATCCTAAAAGTCCCCCATTACCTTCCCCCCCAATTTTCATTACC
CACCCATTCCCATTTTTTGGTCCCTGGN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTGGGAGAGAATTTGGAATCAGGGGAACTGGAGTT
AGTTTTGAAGAACATTTCTTTTCAGATCATGAAAGAAAGGATGATATCTC
AGTCATGTCTCTCAAATATAGAAAAACATGAATTCATTATGAGAAAAGGT
AGAGACATTCTATATTTCTGAGGTGTATATGAATACACACGGAATTTCAT
GTGATTGGGAAAGGAAGATGACACCAAGTTGGTTTTATGTGTTACCTTAT
TTAATTTATTTATTCACTTCCTTCTTTCTTTTTTAATAAGCATGGATATA
TGTATGGTGGGCATACATGATCACAAGTGTTGTGATGCATCCTTGTACAG
GTGTGTGTGGGTGTATACATGTGTCCATACTCAAGAGGATTCCTAAAGGA
AGTATTGGGTTTCTCCTGCTTTCTCTCTGTTATTCTCTATTTGATAGAGT
CCCTCCATGAACTCAAAACAGGATGATTTCAGCTCCTCTTGCTAAGCAAG
TTTACCTAAATATCCCCCATTTCTCTATCCTGAGATCTGTGAGCACAAGC
TGTTACTAGTCTTGCCCTGCTTTCATATAGGATTTGTGGATCTCAACTCC
AGTTCACCCAGGTGAGAAATAAATTATCTGTCTACCGAGCCACCTCTCTC
ATTCCCATTCTATACTTTAAATCTTTGAAATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_m10.g1 MSMg01no526_m10.g1 CHROMAT_FILE:
MSMg01no526_m10.g1 PHD_FILE: MSMg01no526_m10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:48 2005
         (567 letters)



>mm_chr7_14998348_14999310
          Length = 963

 Score = 1062 bits (549), Expect = 0.0
 Identities = 561/567 (98%), Gaps = 4/567 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgggagagaatttggaatcaggggaactggagttagttttgaagaacatttcttttcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 ctgggagagaatttggaatcaggggaactggagttagttttgaagaacatttcttttcag 704

                                                                       
Query: 61  atcatgaaagaaaggatgatatctcagtcatgtctctcaaatatagaaaaacatgaattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 atcatgaaagaaaggatgatatctcagtcatgtctctcaaatatagaaaaacatgaattc 644

                                                                       
Query: 121 attatgagaaaaggtagagacattctatatttctgaggtgtatatgaatacacacggaat 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 643 attatgagaaaaggtagagacattctatatttctgaggtgtatatgaatatacatggaat 584

                                                                       
Query: 181 ttcatgtgattgggaaaggaagatgacaccaagttggttttatgtgttaccttatttaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 583 ttcatgtgattgggaaaggaagatgacaccaagttggttttatgtgttaccttattta-- 526

                                                                       
Query: 241 ttatttattcacttccttctttcttttttaataagcatggatatatgtatggtgggcata 300
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 --atttattcacttccttctttcttttttaataagcatggatatatgtatggtgggcata 468

                                                                       
Query: 301 catgatcacaagtgttgtgatgcatccttgtacaggtgtgtgtgggtgtatacatgtgtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 catgatcacaagtgttgtgatgcatccttgtacaggtgtgtgtgggtgtatacatgtgtc 408

                                                                       
Query: 361 catactcaagaggattcctaaaggaagtattgggtttctcctgctttctctctgttattc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 catactcaagaggattcctaaaggaagtattgggtttctcctgctttctctctgttattc 348

                                                                       
Query: 421 tctatttgatagagtccctccatgaactcaaaacaggatgatttcagctcctcttgctaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tctatttgatagagtccctccatgaactcaaaacaggatgatttcagctcctcttgctaa 288

                                                                       
Query: 481 gcaagtttacctaaatatcccccatttctctatcctgagatctgtgagcacaagctgtta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gcaagtttacctaaatatcccccatttctctatcctgagatctgtgagcacaagctgtta 228

                                      
Query: 541 ctagtcttgccctgctttcatatagga 567
           |||||||||||||||||||||||||||
Sbjct: 227 ctagtcttgccctgctttcatatagga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 963
Length adjustment: 10
Effective length of query: 557
Effective length of database: 953
Effective search space:   530821
Effective search space used:   530821
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)