BAC Information

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BAC

Clone NameMSMg01-527C10
Chromosome7 (Build37)
Map Location 91,011,520 - 91,182,594
singlet/doubletdoublet
Overlap geneMesdc1, Mesdc2, 9930013L23Rik
Upstream geneRkhd3, LOC619909, A530021J07Rik, EG666160, Tmc3, Stard5, Il16, Phgdh-ps1, LOC666170, 1700026D08Rik
Downstream gene2210412D01Rik, Arnt2, LOC100039239, Fah, Zfand6, 2610206C17Rik, EG620480, Olfr291, LOC666276, Olfr290, ENSMUSG00000070600, F830104D24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527C10.T7 (MSMg01no527_c10.b1)MSMg01-527C10.TJ (MSMg01no527_c10.g1)
ACCAG596572AG596573
length751752
length of high quality
(start - end)		624 (48 - 671)676 (77 - 752)
definitionCHROMAT_FILE: MSMg01no527_c10.b1 PHD_FILE: MSMg01no527_c10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:17 2005CHROMAT_FILE: MSMg01no527_c10.g1 PHD_FILE: MSMg01no527_c10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,181,978 - 91,182,594)(91,011,520 - 91,012,195)
sequence
GAGCGAGAGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTGTAATGTTTTAGGGTACACGAAAGGAAGAGAAGACCACAAAT
TCCTAATTCTAGTGGCAGATGGGCAGCAGAAGAGGGGCCCCATGCAGAGG
GAATTATGGGAAGGCAGAAGCCAAAGAGGCCAGTATTTGCAAGGGCCATT
TAGAGGTTTCTGGGAGCTAAAACTATGGTGGAGGGATGGGAACTCCAGGC
CAATAGGAGCAGAGATGACTGTCTACTGTGTCCTGCTCCATGAGAGGAAG
ATTGGGCTCTCCAAGCTGCCTGGCCCAATCCTGCAAGTCACCCTGGCCTG
TGGGCACTCTCCCACCTCTCTGAGCCCTGCTGGCTTGACAGCTCTGCCCT
TCTTCTTGGCTTTGCCTCTAGAGCTATGGCAAGGCTGCTGTTATGAAATA
TGTGCTTGGATTTTCTGGAAACTTCTTGAAGTCGGAAAGAAAAGTCTGCC
TGCTGGTTCTGAGATGGCTTCCTTGCCATCACTGACTCCCAGAGGAAGTA
AACAGGTTTGAGCTCCAGGGAGCTGCCTGGGATACACTGCTCAGATTGTA
GAGTGCCACCAGCCCGAAGTGTGGGCAGCCAGCCTGAGCCTGCAGTGCCC
AAGTGTTTGCCCAGGTGCCCTGGGCAGACCAGCTTGGGGCATGTGGGAGG
TGGGGTAAGGGGCACTGTGGCCAGAGGAAGAGCCCTAGGGTGTCCAGGCC
G

NNCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTCAAGCGTGAG
GTGGAGGTGGGNAGGGTTCGGCGGAGTTCAAAACAGTACCTAATAGGAAA
GCTCTTACTATCGCAATGACCCTTCTTGACCTCGGCCTCTACACTTAAAA
GGCAGGAACTGTTTTATCTTGCTTTTCTTTGAACTTTTGGCCACAGCCTT
GTTTTCCCTGGGCATCACCCATTAGGGAGCTTACATCTCTCTCCTATTTG
AGTTTCAAGTTCTCCATCTGTAAAACAGGGATGAAAATACCTTACAGGGT
TTTAATAAAGCATGGATGGGTTTGGAGGTGCTGCATACAGAGCTATTGGC
AGTAATATTGTCAGCAGCAATACTCACTTGTAATCCCAAAGAAATTGTTC
TTCACCAAAAAAACAAAAACAAAAACAAAAACTCTTCCCCAGAGCCAGGA
ATGGTGTCAAACACCTGTAACGCTAGCACTTGGAAGAGTAGGGATCAGGA
GTTTGAGCCCAGTTTTGGCTACCGAGTGAGTTCTAGGCTAGCCTGGGCTA
TACATGAGACCTTGTCTCTTAAAACTATTCATTAAAATAATAAACAGAGT
TCTTTCTCAGCACATCTTGCTGTAAACTTCACTTCATCATCATTAACTTT
GTACAAAAGTGCCATCCTGGAGTCCCAGGACAGAAGTGGACCCTGAGTCC
CTAATGCCTTCTGTAGCTCCTGAAGTTGTACCAGATTGTGAAACATAATT
AG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_c10.b1 MSMg01no527_c10.b1 CHROMAT_FILE:
MSMg01no527_c10.b1 PHD_FILE: MSMg01no527_c10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:17 2005
         (624 letters)



>mm_chr7_91181771_91182794
          Length = 1024

 Score = 1170 bits (605), Expect = 0.0
 Identities = 614/617 (99%)
 Strand = Plus / Minus

                                                                       
Query: 8   ttctgtaatgttttagggtacacgaaaggaagagaagaccacaaattcctaattctagtg 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 ttctgtaatgttttagggtacacgaaaggaagagaagaccacaaattcctaattctagtg 765

                                                                       
Query: 68  gcagatgggcagcagaagaggggccccatgcagagggaattatgggaaggcagaagccaa 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 gcagatgggcagcagaagaggggccccatgcagagggaattatgggaaggcagaagccaa 705

                                                                       
Query: 128 agaggccagtatttgcaagggccatttagaggtttctgggagctaaaactatggtggagg 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 agaggccagtatttgcaagggccatttagaggtttctgggagctaaaactatggtggagg 645

                                                                       
Query: 188 gatgggaactccaggccaataggagcagagatgactgtctactgtgtcctgctccatgag 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 gatgggaactccaggccaataggagcagagatgactgtctactgtgtcctgctccatgag 585

                                                                       
Query: 248 aggaagattgggctctccaagctgcctggcccaatcctgcaagtcaccctggcctgtggg 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 aggaagattgggctctccaagctgcctggcccaatcctgcaagtcaccctggcctgtggg 525

                                                                       
Query: 308 cactctcccacctctctgagccctgctggcttgacagctctgcccttcttcttggctttg 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 524 cactctcccacctctctgagccctgctggcttgacagctctgcccttcttcttggctctg 465

                                                                       
Query: 368 cctctagagctatggcaaggctgctgttatgaaatatgtgcttggattttctggaaactt 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 cctctagagctatggcaaggctgctgttatgaaatatgtgcttggattttctggaaactt 405

                                                                       
Query: 428 cttgaagtcggaaagaaaagtctgcctgctggttctgagatggcttccttgccatcactg 487
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 404 cttgaagtcggaaagaaaagtctgcctgctggttctgagatggcttccttgccatcgctg 345

                                                                       
Query: 488 actcccagaggaagtaaacaggtttgagctccagggagctgcctgggatacactgctcag 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 actcccagaggaagtaaacaggtttgagctccagggagctgcctgggatacactgctcag 285

                                                                       
Query: 548 attgtagagtgccaccagcccgaagtgtgggcagccagcctgagcctgcagtgcccaagt 607
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 attgtagggtgccaccagcccgaagtgtgggcagccagcctgagcctgcagtgcccaagt 225

                            
Query: 608 gtttgcccaggtgccct 624
           |||||||||||||||||
Sbjct: 224 gtttgcccaggtgccct 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space:   622596
Effective search space used:   622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no527_c10.g1 MSMg01no527_c10.g1 CHROMAT_FILE:
MSMg01no527_c10.g1 PHD_FILE: MSMg01no527_c10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:18 2005
         (676 letters)



>mm_chr7_91011320_91012395
          Length = 1076

 Score = 1307 bits (676), Expect = 0.0
 Identities = 676/676 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcaaaacagtacctaataggaaagctcttactatcgcaatgacccttcttgacctcggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcaaaacagtacctaataggaaagctcttactatcgcaatgacccttcttgacctcggc 260

                                                                       
Query: 61  ctctacacttaaaaggcaggaactgttttatcttgcttttctttgaacttttggccacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctacacttaaaaggcaggaactgttttatcttgcttttctttgaacttttggccacag 320

                                                                       
Query: 121 ccttgttttccctgggcatcacccattagggagcttacatctctctcctatttgagtttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttgttttccctgggcatcacccattagggagcttacatctctctcctatttgagtttc 380

                                                                       
Query: 181 aagttctccatctgtaaaacagggatgaaaataccttacagggttttaataaagcatgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagttctccatctgtaaaacagggatgaaaataccttacagggttttaataaagcatgga 440

                                                                       
Query: 241 tgggtttggaggtgctgcatacagagctattggcagtaatattgtcagcagcaatactca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgggtttggaggtgctgcatacagagctattggcagtaatattgtcagcagcaatactca 500

                                                                       
Query: 301 cttgtaatcccaaagaaattgttcttcaccaaaaaaacaaaaacaaaaacaaaaactctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttgtaatcccaaagaaattgttcttcaccaaaaaaacaaaaacaaaaacaaaaactctt 560

                                                                       
Query: 361 ccccagagccaggaatggtgtcaaacacctgtaacgctagcacttggaagagtagggatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccccagagccaggaatggtgtcaaacacctgtaacgctagcacttggaagagtagggatc 620

                                                                       
Query: 421 aggagtttgagcccagttttggctaccgagtgagttctaggctagcctgggctatacatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggagtttgagcccagttttggctaccgagtgagttctaggctagcctgggctatacatg 680

                                                                       
Query: 481 agaccttgtctcttaaaactattcattaaaataataaacagagttctttctcagcacatc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaccttgtctcttaaaactattcattaaaataataaacagagttctttctcagcacatc 740

                                                                       
Query: 541 ttgctgtaaacttcacttcatcatcattaactttgtacaaaagtgccatcctggagtccc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttgctgtaaacttcacttcatcatcattaactttgtacaaaagtgccatcctggagtccc 800

                                                                       
Query: 601 aggacagaagtggaccctgagtccctaatgccttctgtagctcctgaagttgtaccagat 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aggacagaagtggaccctgagtccctaatgccttctgtagctcctgaagttgtaccagat 860

                           
Query: 661 tgtgaaacataattag 676
           ||||||||||||||||
Sbjct: 861 tgtgaaacataattag 876


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space:   709956
Effective search space used:   709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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