BAC Information

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BAC

Clone NameMSMg01-527G06
Chromosome7 (Build37)
Map Location 115,856,170 - 115,856,828
singlet/doubletsinglet
Overlap genenone
Upstream genePpfibp2, Cyb5r2, Ovch2, LOC100042310, Olfr467, Olfr468-ps1, Olfr469, GA_x5J8B7W6B6J-2580381-2580079, Olfr470, Olfr471, LOC626661, Olfr472, Olfr473, LOC669301, Olfr474, Olfr476, Olfr477, LOC626732, Olfr478, Olfr479, Olfr480, Olfr481, LOC100043059, Olfr482, Olfr483, Olfr484, Olfr485, Olfr486, Olfr487, Olfr1538-ps1, Olfr488, LOC546990, Olfr489-ps1, Olfr490, LOC626881, Olfr491, Olfr492, Olfr493, Olfr494, Olfr495, Olfr496-ps1, Olfr497, Olfr498, Olfr499-ps1, Olfr500-ps1, Olfr501-ps1, Olfr502, LOC269980, Olfr503, Olfr504, Olfr505-ps1, Olfr506, Olfr507, Olfr508, Olfr509, Olfr510, Olfr511-ps1
Downstream geneOlfr512, Olfr513, Olfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518, Olfr519, Nlrp10, Eif3s5, BC049265, Tub, Ric3, Lmo1, Stk33, EG668320, 1700095J03Rik, Trim66, Rpl27a, St5, LOC100042582, D930014E17Rik, BC051019
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527G06.T7 (MSMg01no527_g06.b1)MSMg01-527G06.TJ (MSMg01no527_g06.g1)
ACCAG596756AG596757
length748751
length of high quality
(start - end)		684 (54 - 737)662 (83 - 744)
definitionCHROMAT_FILE: MSMg01no527_g06.b1 PHD_FILE: MSMg01no527_g06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:36 2005CHROMAT_FILE: MSMg01no527_g06.g1 PHD_FILE: MSMg01no527_g06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGAGTTGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAGTAATAGCAACATATGAAGAAAGAAATGAAACCAGT
AACATTTGGCTAATATTAATATGAATCAACACAGAACAAAAAAGGTCAGA
GATACTTGAAATGTATATATTCACAGAAAACAAATAAAAAAGGATGTGCT
GACAAGGTCAAAGGTATGTAGGGTTGTATGGCCAAGTAATGATAGCCAGG
GACAATATGTCTCTACTAGAGCCCAGGAACCCTACCACAACAGGCCCTGA
GAATTGCAACACAGATGAAGCATATAACAAAGAGCATAAAATAGCTTTTA
TGTATATGAGAGATCTCCTTTTAAAAAAGAAATGAATATATCCCTTAAAG
AGACCTATGTAAAACAAGCAGTGGGAGGAAGAGAATAAAACAGTCCAAGA
TCCAAAACTAGGGATAGAATCAATAAAGAAAACCAAAACCAAGGGAAATC
AGAAAATATAATTTAGGTACTAGAACAGGAACCTCAGAGACAAACCTATC
CAAAAAAGTACAAGAGATTGAAGAGATGACCTCAGATATTGAAGAACCAA
TAGAAGAAATAGATACCTCCATCAAAGCAAGTGTTAAGTCAAAAAGTCAC
CTAGCATAAAACATTGATGAAAACTAGTACATTATGGAAAGACCAAATTG
AAGAATAATAGATATAGAGGAAGGAGAGTACAACCAGTGGAGGTAATN

ATTTCCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAACTTGGAGTTCTTGGC
AGAACTTTTAAAGACATGCTCTTTTTAACAGAGGTTCAGATGAGCAGTTT
TGAAGAATGGTCAATATGTTGTATCAGTGAATCTTTAAAAGACAAGTGGA
GAGTTATAAAACTTTGTCTCAGAAATGTTTAACAAATATAAAATAATGCT
GTTGAAATGACTCAGCTATTAAAAGAACTTGCCACAGAACCTGACTTCAA
TTCCATCCCTGGATCCCCCCCAAAACAACAAAACAATACAAAAGTTTGAT
ATAGGAGCACATCTGTAATCCCAGTGCCCCTATAACAAAATGTGAGTGGC
AGGCAAAGCCAAATGAAATACCCTTAAGCTTGAAGGCCAGTTATCCTGGA
GCACATAGTTCAGTAGAAACAAAACAGAGCATCATTAGTATGGTGGACAA
AGGGAAGCAATACTTAAGAGTTCCCTGAATTCCACAAGCTCTCCATGGCA
TATGTATACACACACACACACACACACACACACACACACACACACACACA
CACACACACTTTATTATGATTATTGTTGTTATTATTATTCCTATTATTAT
GCTGATGCTGATGCTGTAAACGACCAAAGAGTACACATGGAGAGGCACAT
GGCTCCAGCTGCATATGTAGCAGAGCATGGCTTAATTTGGCATCAATGGG
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_g06.g1 MSMg01no527_g06.g1 CHROMAT_FILE:
MSMg01no527_g06.g1 PHD_FILE: MSMg01no527_g06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:36 2005
         (662 letters)



>mm_chr7_115856155_115857216
          Length = 1062

 Score = 1123 bits (581), Expect = 0.0
 Identities = 641/665 (96%), Gaps = 9/665 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaacttggagttcttggcagaacttttaaagacatgctctttttaacagaggttcagatg 60
           ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| 
Sbjct: 674 aaacttggagttcttggcagaaaatttaaagacatgctctttttaacagaggttcagatt 615

                                                                       
Query: 61  agcagttttgaagaatggtcaatatgttgtatcagtgaatctttaaaagacaagtggaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 agcagttttgaagaatggtcaatatgttgtatcagtgaatctttaaaagacaagtggaga 555

                                                                       
Query: 121 gttataaaactttgtctcagaaatgtttaacaaatataaaataatgctgttgaaatgact 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gttatacaactttgtctcagaaatgtttaacaaatataaaataatgctgttgaaatgact 495

                                                                       
Query: 181 cagctattaaaagaacttgccacagaacctgacttcaattccatccctggatccccccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 cagctattaaaagaacttgccacagaacctgacttcaattccatccctggatccccccca 435

                                                                       
Query: 241 aaacaacaaaacaatacaaaagtttgatataggagcacatctgtaatcccagtgccccta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 aaacaacaaaacaatacaaaagtttgatataggagcacatctgtaatcccagtgccccta 375

                                                                       
Query: 301 taacaaaatgtgagtggcaggcaaagccaaatgaaatacccttaagcttgaaggccagtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 taacaaaatgtgagtggcaggcaaagccaaatgaaatacccttaagcttgaaggccagtt 315

                                                                       
Query: 361 atcctggagcacatagttcagtagaaacaaaacagagcatcattagtatggtggacaaag 420
           | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 314 agcctggagcacatagttcagtagaaacaaaacagagcatcattaatatggtggacaaag 255

                                                                       
Query: 421 ggaagcaatacttaagagttccctgaattccacaagctctccatggcatatgtatacaca 480
           ||||||| ||| ||| ||||||||||| |||||||||||||||||||||||||      |
Sbjct: 254 ggaagcagtacctaaaagttccctgaactccacaagctctccatggcatatgt------a 201

                                                                       
Query: 481 cacacacacacacacacacacacacacacacacacacacacacacactttattatgatta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| 
Sbjct: 200 cacacacacacacacacacacacacacacacacacacacacacacactttattattattg 141

                                                                       
Query: 541 ttgttgttattattattcctattat--t-atgctgatgctgatgctgtaaacgaccaaag 597
           |||||||||||||||||||||||||  | ||| ||||| |||||||||||||||||||||
Sbjct: 140 ttgttgttattattattcctattatgatgatgatgatgatgatgctgtaaacgaccaaag 81

                                                                       
Query: 598 agtacacatggagaggcacatggctccagctgcatatgtagcagagcatggcttaatttg 657
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 80  agtacacatggagaggcacatggcttcagctgcatatgtagcagagcatggcttaatttg 21

                
Query: 658 gcatc 662
           |||||
Sbjct: 20  gcatc 16


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 74
Number of extensions: 25
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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