BAC Information

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BAC

Clone NameMSMg01-527G12
Chromosome7 (Build37)
Map Location 116,368,299 - 116,368,944
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr488, LOC546990, Olfr489-ps1, Olfr490, LOC626881, Olfr491, Olfr492, Olfr493, Olfr494, Olfr495, Olfr496-ps1, Olfr497, Olfr498, Olfr499-ps1, Olfr500-ps1, Olfr501-ps1, Olfr502, LOC269980, Olfr503, Olfr504, Olfr505-ps1, Olfr506, Olfr507, Olfr508, Olfr509, Olfr510, Olfr511-ps1, Olfr512, Olfr513, Olfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518, Olfr519, Nlrp10, Eif3s5, BC049265, Tub, Ric3, Lmo1
Downstream geneStk33, EG668320, 1700095J03Rik, Trim66, Rpl27a, St5, LOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5, Rab6ip1, Tmem41b, Ipo7, AA474408, Zfp143, Wee1, Swap70
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527G12.T7 (MSMg01no527_g12.b1)MSMg01-527G12.TJ (MSMg01no527_g12.g1)
ACCAG596768AG596769
length725725
length of high quality
(start - end)		672 (54 - 725)651 (75 - 725)
definitionCHROMAT_FILE: MSMg01no527_g12.b1 PHD_FILE: MSMg01no527_g12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:38 2005CHROMAT_FILE: MSMg01no527_g12.g1 PHD_FILE: MSMg01no527_g12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTTACCTTCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCAGTTCTATTCTGTGGATTGATATGTCTGCCTGTGCC
AATGATTAGCACTACACCACTGCTTCAATTTTTTTTTACCTTTTTAAAAA
AATTTTTATTACATATTTTCCTCAATTACATTTCCAATGCTATCCCCTAA
GTCCTCCATACCCTCCCCCCAACTTCCCTACCCACCCATCCCCATTTTTT
TTTGGCCCTGGCGTTCCCCTGGACTGGGGCATATAAAGTTTGTGTGTCCA
ATGGGCCTCTCTTTCCAGTGATGGCTGACTAGGCCATCTTTTGATACATA
TGCAGCTAGAGTCAAGAGCTCTGGGGTACTGGTTAGTTCACAATGTTGTT
CCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTGTCTCTAGC
TCCTCCATTGGGAACCCTGTGATCCATCCACTAGCTGACTGTGAGCATCC
ACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGACAGCTATAT
CTGGGTCCTTTCAGCAAATTCTTGCTAGTGTATGCAATGGTGTCAGCGTT
TAGAAGCTGATTATGGGGTGGATACCTGGATATGGCAGTCTCTAGATGGT
CCATCCTTTCATCACAGCTCCAAACTTTATCTCTGGGACCTCATGAAACT
GCTCGAATTTTTAGTTTTTTCTTTN

NAAATTTAGCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTTCGTCCGCGGAATTCTGATGAGGAACACAA
GTGGCTTGCAAAGCTCTGACTGAGCATCAGAGCCCACAGCTGCTCAGTGT
TGTTCTGTTTCCAGGCAAGTTATCAAAGCCAGAGGCCTGTAGCAGCAAGG
CCAGGAGATGCCCTCCAGCCCTTGCTGGCTTTAGAGGGCTAATTCTAAAT
CCCTGGCAAAGGGGAAGGCAGCAGCTGGTGAAGAACTGATGTTCCTGGCT
CTGGAACTTTCTGCCCAGCATCTTACCCTGCGGCTCTTAGGGTGTCATGA
TGACTAATCTTGACTGTCAACTTGACTGGCTCTAAACTCAACTAAGAGAC
ACTCTTCTGCAGGGAGGACATTTTCAGGAAGGATTGACTGGGGGGAAGAG
ACCTTCCCTTAGAGTAGGCAGCACCCTGGCAGTGGCTCAGATATAGCCAG
CGGTCCTTGGCAAAAGCAGGGTTGCTCGCTCTTCTTCACTTCTTGCTGGT
GAGCCGATCCACCCCACTGTTGCTGCTCACATCAGAAGCTGGCCTCCTTG
GTCTTTCCATGTAGACTGAAGATCAGTGGATCTCCAGAAATCCTTCTATG
CTCTCCGGCTTGGCTCCTCCAGGTGTAGCTGAGTTGAGTCCCTGCTGGCA
GAGACAGGCTCCCATGCCAAACATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_g12.g1 MSMg01no527_g12.g1 CHROMAT_FILE:
MSMg01no527_g12.g1 PHD_FILE: MSMg01no527_g12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:38 2005
         (651 letters)



>mm_chr7_116368094_116369144
          Length = 1051

 Score = 1241 bits (642), Expect = 0.0
 Identities = 645/646 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctgatgaggaacacaagtggcttgcaaagctctgactgagcatcagagcccacag 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctgatgaggaacacaagtggcttgcaaagctctgactgagcatcagagcccacag 265

                                                                       
Query: 66  ctgctcagtgttgttctgtttccaggcaagttatcaaagccagaggcctgtagcagcaag 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ctgctcagtgttgttctgtttccaggcaagttatcaaagccagaggcctgtagcagcaag 325

                                                                       
Query: 126 gccaggagatgccctccagcccttgctggctttagagggctaattctaaatccctggcaa 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gccaggagatgccctccagcccttgctggctttagagggctaattctaaatccctggcaa 385

                                                                       
Query: 186 aggggaaggcagcagctggtgaagaactgatgttcctggctctggaactttctgcccagc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aggggaaggcagcagctggtgaagaactgatgttcctggctctggaactttctgcccagc 445

                                                                       
Query: 246 atcttaccctgcggctcttagggtgtcatgatgactaatcttgactgtcaacttgactgg 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 atcttaccctgcggctcttagggtgtcatgatgactaatcttgactgtcaacttgactgg 505

                                                                       
Query: 306 ctctaaactcaactaagagacactcttctgcagggaggacattttcaggaaggattgact 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ctctaaactcaactaagagacactcttctgcagggaggacattttcaggaaggattgact 565

                                                                       
Query: 366 ggggggaagagaccttcccttagagtaggcagcaccctggcagtggctcagatatagcca 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ggggggaagagaccttcccttagagtaggcagcaccctggcagtggctcagatatagcca 625

                                                                       
Query: 426 gcggtccttggcaaaagcagggttgctcgctcttcttcacttcttgctggtgagccgatc 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gcggtccttggcaaaagcagggttgctcgctcttcttcacttcttgctggtgagccgatc 685

                                                                       
Query: 486 caccccactgttgctgctcacatcagaagctggcctccttggtctttccatgtagactga 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 caccccactgttgctgctcacatcagaagctggcctccttggtctttccatgtagactga 745

                                                                       
Query: 546 agatcagtggatctccagaaatccttctatgctctccggcttggctcctccaggtgtagc 605
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 746 agatcagtggatctccagaaatccttctatgctctcctgcttggctcctccaggtgtagc 805

                                                         
Query: 606 tgagttgagtccctgctggcagagacaggctcccatgccaaacatc 651
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 tgagttgagtccctgctggcagagacaggctcccatgccaaacatc 851


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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