BAC Information

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BAC

Clone NameMSMg01-527N16
Chromosome7 (Build37)
Map Location 28,534,765 - 28,535,434
singlet/doubletsinglet
Overlap geneZfp60
Upstream geneCyp2b19, Cyp2g1, LOC100043745, Cyp2a5, EG233005, EG330491, Cyp2a12, LOC100043199, Cyp2f2, Gm1450, Egln2, Rab4b, Mia1, Snrpa, Itpkc, Adck4, Numbl, Ltbp4, Shkbp1, Spnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3, 2310022A10Rik, Akt2, Ttc9b, Map3k10, C030039L03Rik
Downstream geneLOC100043229, LOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4, LOC100043774, 9530053A07Rik, Fbl, Dyrk1b, Eid2, LOC434156, BC089491, Dll3, Timm50, Supt5h, Rps16, Plekhg2, Zfp36, Ixl, Paf1, Samd4b, 1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28, Sycn, 1190020J12Rik, Pak4, C330005M16Rik, Fbxo27, Fbxo17, Mrps12, Sars2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527N16.T7 (MSMg01no527_n16.b1)MSMg01-527N16.TJ (MSMg01no527_n16.g1)
ACCAG597109AG597110
length776790
length of high quality
(start - end)		592 (48 - 639)601 (79 - 679)
definitionCHROMAT_FILE: MSMg01no527_n16.b1 PHD_FILE: MSMg01no527_n16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:16 2005CHROMAT_FILE: MSMg01no527_n16.g1 PHD_FILE: MSMg01no527_n16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATTATGATGTGAAGCCATTTCAGTGCAAGGAATGTGGAAAGGG
CTTTGTTCGTAGTACAGGCCTTAGAATTCATGAAAGGATCCACACTGGTG
AGAAGCCCTTTCAGTGTAAGGAGTGTGGAAAAGCCTTTCAGTATCATTAC
CAATTTCTTGGACACTTTAGAATTCATACTGGCAAGAACCCTTACGAATG
TAGCGAATGTGGGAAGTACTTTACTTATGGTCGAGACCTTAAAGTACATC
AGAGTATTCACAATCTTGAGAAACCGTAAGAATGTGGGAAGGCCTTCAGT
TGAAAATCAAAGGTGGTTTGACATGCTAAACTTAATATTATGAAGAAGAA
GCCTTACAATGCTTATAAGAAATGTGGAAAGCCTTCAGTAATTCTAAGCT
ACTTGTATATCGGAGAATTCATACTGGTCTGAAACCCTATCACTGTAAAG
AATGTGGAAAGACCCGCAGCTGAAGCTCAGGCCTTCAACCTAAAACTATC
CATGCTGTCGTGAACCACTAAGCAAGGAGTGTGTAAACATTTATAGAATT
CATTCTGAAAACTCATGAAGGAGTCCATATAGGTCTGAAACCATAAGGAT
GTGAAAAAAATTTTATTGTTAAATGGTGAGCTTATACAGCATGAGAAAAG
GAAGACTGATAAGACTTTATGGAAATTTTACTGAACATCAAAGAAGTCAT
TGACAAACTGGGACTGAAAGGAGTCT

NCGCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGATTGTGTTATTTACTGGA
AAATCATGTTTCTAGTTGTGTGGCTCAGCCTTAGCACACGCTTTTAATAT
CCTTCTGGCTGCAATATACCTCTAAGTGTACTAAGACTATGTCTCTTAAG
TACTAAGACACAGTCTTAGTACAACACCTTTAATCCCAATGAAGGTAGAG
TTAGCTTGTAGAAGGAAGCACCCATATTTGAAAGTGATCTAATTGAGTGG
CAGATGAAGTGACGAATCAGTGAAAGATTTGATAGAATAGGATATGCCCA
ACTCTCACAAGACATGAGGGGAAAGTGAAGCTACTTGAGGGGCACTGGGG
AGAGAGACAGAGACAGACAGTTTTTACTAGAACATTTGTACAGAGACAGG
GTGTAGAAATGGAACAATCTAGAAACAGGTGAAGCAGAGAATAAGAAGGA
GCCAGAAGTTTAGAACAAATTGCCAGAGTTAGTTTGAGGCCAAGGAGAAC
AGTTAAGGAGAAGCCAGATGGAATCAGTTGAAGAGGAGAGGAGTTTTGAG
CTACAAAATTTGAGTTGACCAGCCAGAAAGAGTCCACAGTGCATTAGAAA
GGGTGAACTTACTCAGCAGCAAGTCCCAGAGGCTGAAAACATTCTAGGCC
TAGATTAGATTTTTATGGAGGCTAGAAGTTTCCAGGGACTCACAGAGGAA
GCTACTAGCCTCTGTAAAATCTAATCTAGGGCAAGGCAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_n16.b1 MSMg01no527_n16.b1 CHROMAT_FILE:
MSMg01no527_n16.b1 PHD_FILE: MSMg01no527_n16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:16 2005
         (592 letters)



>mm_chr7_28534643_28535634
          Length = 992

 Score =  866 bits (448), Expect = 0.0
 Identities = 575/670 (85%), Gaps = 82/670 (12%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattatgatgtgaagccatttcagtgcaaggaatgtggaaagggctttgttcgta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 gaattcattatgatgtgaagccatttcagtgcaaggaatgtggaaagggctttgttcgta 182

                                                                       
Query: 65  gtacaggccttagaattcatgaaaggatccacactggtgagaagccctttcagtgtaagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 gtacaggccttagaattcatgaaaggatccacactggtgagaagccctttcagtgtaagg 242

                                                                       
Query: 125 agtgtggaaaagcctttcagtatcattaccaatttcttggacactttagaattcatactg 184
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 agtgtggagaagcctttcagtatcattaccaatttcttggacactttagaattcatactg 302

                                                                       
Query: 185 gcaagaacccttacgaatgtagcgaatgtgggaagtactttacttatggtcgagacctta 244
           ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 303 gcaagaacccttatgaatgtagtgaatgtgggaagtactttacttatggtcgagacctta 362

                                                                       
Query: 245 aagtacatcagagtattcacaatcttgagaaaccgtaagaatgtgggaaggccttcagtt 304
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 363 aagtacatcagagtattcacaatcttgagaaaccgtaagaatgtgggaagaccttcagtt 422

                                                                       
Query: 305 gaaaatcaaaggtggtttgacatgctaaacttaatattatgaagaagaagccttacaatg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gaaaatcaaaggtggtttgacatgctaaacttaatattatgaagaagaagccttacaatg 482

                                                                       
Query: 365 cttataagaaatgtggaaagccttcagtaattctaagctacttgtatatcggagaattca 424
           |||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 483 cttataaggaatgtggaaagccttcagtaattctaagctacctgtatatcagagaattca 542

                                                                       
Query: 425 tactggtctgaa--ac-----------------------------------------cct 441
           ||||||||||||  ||                                         |||
Sbjct: 543 tactggtctgaagcactgttgatatgaaaattgtgagaaagtttagattaagttcagcct 602

                                                                       
Query: 442 ---------------------------------------atcactgtaaagaatgtggaa 462
                                                  |||||||||||||||||||||
Sbjct: 603 tcagtgtacatcaaagaattcatattggtctgaaaccccatcactgtaaagaatgtggaa 662

                                                                       
Query: 463 agacccgcagctgaagctcaggccttcaacctaaaactatccatgctgtcgtgaaccact 522
           ||||||||| |||||||||||||||||| | ||||| |||||||||||||||||| ||||
Sbjct: 663 agacccgcaactgaagctcaggccttcagcataaaagtatccatgctgtcgtgaaacact 722

                                                                       
Query: 523 aagcaaggagtgtgtaaacatttatagaattcattctgaaaactcatgaaggagtccata 582
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 atgcaaggagtgtgtaaacatttatagaattcattctgaaaactcatgaaggagtccata 782

                     
Query: 583 taggtctgaa 592
           ||||||||||
Sbjct: 783 taggtctgaa 792


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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