Query= MSMg01no528_b02.b1 MSMg01no528_b02.b1 CHROMAT_FILE:
MSMg01no528_b02.b1 PHD_FILE: MSMg01no528_b02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:34 2005
(663 letters)
>mm_chr7_50659741_50660803
Length = 1063
Score = 1100 bits (569), Expect = 0.0
Identities = 590/599 (98%), Gaps = 5/599 (0%)
Strand = Plus / Minus
Query: 5 gaattcagtttgtgctgcccatgtgtacatgtggccatttcttggagcagagacaactta 64
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 909 gaattcagtttgtgctgcccatgtgtacatgtggccatttcttgaagcagagacaactta 850
Query: 65 ctgggtggttgttgcatttccaaaagttagtgactctccctttgtagccatcagcttcca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 ctgggtggttgttgcatttccaaaagttagtgactctccctttgtagccatcagcttcca 790
Query: 125 agagctcctctactagggttagagccataggatcttcctcagtccttgttgggctggaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 agagctcctctactagggttagagccataggatcttcctcagtccttgttgggctggaat 730
Query: 185 ttttgctggcttgatctttgcaatatttttcattctcatgtctgctagactagcctgtga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 ttttgctggcttgatctttgcaatatttttcattctcatgtctgctagactagcctgtga 670
Query: 245 aagtgtagtaggaaaacacagtggtctctgggtttttcctccagagatataaccaattat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 aagtgtagtaggaaaacacagtggtctctgggtttttcctccagagatataaccaattat 610
Query: 305 ggactaatagtataaataatgtatctatcctgagtatgcagattttgtcctgaccaatac 364
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 609 ggactaacagtataaataatgtgtctatcctgagtatgcagattttgtcctgaccaatac 550
Query: 365 tcctcaaatactaaagcatgtacagagcttgcactgtatcaaggatcatatataattcag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tcctcaaatactaaagcatgtacagagcttgcactgtatcaaggatcatatataattcag 490
Query: 425 aaataacttaaagtacatgagaggatatacagagactggttgccagcactaaatctattt 484
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 aaatgacttaaagtacatgagaggatatacagagactggttgccagcactaaatctattt 430
Query: 485 tctactatttgcctgctattatcatccatccacccatccatccatctatccatctatcca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tctactatttgcctgctattatcatccatccacccatccatccatctatccatctatcca 370
Query: 545 cccatctatc-atctatctatctatctatctatctatctatctatctatctatctatct 602
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ----tctatctatctatctatctatctatctatctatctatctatctatctatctatct 315
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 87
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no528_b02.g1 MSMg01no528_b02.g1 CHROMAT_FILE:
MSMg01no528_b02.g1 PHD_FILE: MSMg01no528_b02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:34 2005
(632 letters)
>mm_chr7_50352259_50353290
Length = 1032
Score = 513 bits (265), Expect = e-149
Identities = 561/715 (78%), Gaps = 102/715 (14%)
Strand = Plus / Plus
Query: 9 atggttgagagccaccatatggaagctgggatttgaactgaggacctctggaagagaagt 68
|||||| ||||||| || |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 209 atggtt--gagccactatgtggatgctgggatttgaactgaggacctctggaagagaagt 266
Query: 69 caatgctcttaacagctaggccatctctctagtcccgtgatacaac-cctaagatcagaa 127
|| ||||||||||||||| |||||||| |||||||||||||| ||| | ||||||| |||
Sbjct: 267 cagtgctcttaacagctaagccatctccctagtcccgtgataaaactcttaagatctgaa 326
Query: 128 tgtaccctataattagaccaaaatt-taaaactaatttatacagatagaaaggattcatc 186
| |||| || ||||||||| ||||| ||||||||||| |||||||||||||| ||||||
Sbjct: 327 tctaccttacaattagacc-aaattgtaaaactaattcatacagatagaaagcattcatt 385
Query: 187 attgtaattaatgtaataaaat-tttcatgtcccaattatcattgcaggcaca--aaatc 243
|||| |||||||||||||||| || |||||||| ||||||||||||| ||| |||
Sbjct: 386 gttgtcattaatgtaataaaatattacatgtccccattatcattgcag--acatgaaaga 443
Query: 244 actcctgctggagagaaacc-ctatgaatatacacaatgggataaagccttcaaatatca 302
| ||||| ||||||| |||| | |||||||||||||||| ||||||||||||| ||||||
Sbjct: 444 agtcctgttggagag-aaccacaatgaatatacacaatgtgataaagccttcacatatca 502
Query: 303 cagtcatcttcaaaagcttgaaagaaaccaaactggagacaaaaactcggaagtctttca 362
|||||||||||||||||||||||||||||||||| |||| ||| |||| |||| ||||||
Sbjct: 503 cagtcatcttcaaaagcttgaaagaaaccaaactcgagagaaacactctgaaggctttca 562
Query: 363 acata--gtaaagtgcttacatgtcaaagtactctccaaagaaataaaagaacagatact 420
||||| | ||| ||| ||||||| ||| ||||||||| | |||||| |||| |||||
Sbjct: 563 acatatgg--aagcacttgcatgtcagagttctctccaaatacataaaataacacatact 620
Query: 421 agagagaaaccctacaaatgtaatgaatgtgataaagcctttttaaagctcaagtatctt 480
||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||
Sbjct: 621 ggagagaaaccctacaaatgtaatcaatgtgataaagcctttgcacagctcaagtatctt 680
Query: 481 cgactacatgaaagaat--------------------------------------at--- 499
||| ||||||||||||| ||
Sbjct: 681 cgattacatgaaagaatacatactggagagaaaccttacaaatgtaatcagtgtgataaa 740
Query: 500 -------------------at-tc----------------tg------gga-agaaaccc 516
|| || || ||| ||||||||
Sbjct: 741 gcctttgcacaaggcagtaatctcaaagtacatacaaggatgcatactggagagaaaccc 800
Query: 517 tatgaatgtaatcaatgtggtaaagcctttttaca-tcccagctatcttcgaatgcatga 575
||||||||||||||||||||||||||||||||||| ||| |||| ||||||||| |||||
Sbjct: 801 tatgaatgtaatcaatgtggtaaagcctttttacaatcc-agctgtcttcgaatacatga 859
Query: 576 aagaacacatactggagagaaaccttaccaatgtaatcaatgtggcaaagccttt 630
|||||||||||||||||||||||| ||| ||||||||||||||| |||||||||
Sbjct: 860 aagaacacatactggagagaaaccctacaaatgtaatcaatgtgataaagccttt 914
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space: 635684
Effective search space used: 635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
