BAC Information

Click to search

BAC

Clone NameMSMg01-528E06
Chromosome7 (Build37)
Map Location 47,957,422 - 47,958,063
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039050, EG668540, 4930558N11Rik, EG628161
Downstream geneLOC100039094, 2900093B09Rik, 4930433I11Rik, EG233164, LOC668555, EG627987, LOC100039269, LOC545955, EG628304, LOC668561, EG434172, LOC100039221, LOC668565, AI987944, EG269902, LOC100039375, EG628359, 2610021A01Rik, 2810426N06Rik, LOC668576, Gprc2a-rs5, LOC628372, EG668579
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-528E06.T7 (MSMg01no528_e06.b1)MSMg01-528E06.TJ (MSMg01no528_e06.g1)
ACCAG597423AG597424
length751748
length of high quality
(start - end)
692 (51 - 742)642 (87 - 728)
definitionCHROMAT_FILE: MSMg01no528_e06.b1 PHD_FILE: MSMg01no528_e06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:49 2005CHROMAT_FILE: MSMg01no528_e06.g1 PHD_FILE: MSMg01no528_e06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAAATTTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTACCTCCAGATCTGTAGGCAACAGGAAGAAAGAAGCAATG
AGCCTGGCTTGAACATTTGAACCCCCCAAACCCACTTCCAGTGTACTAGC
TGGTTTTATGTGTCAACTTGACACAAGCTGCAGTTATCACAAAAAGAGAA
GCTTCAGTTGAGGAAATGCCTCCATGAGGTCCAGCTGTAAGGCATTTTCT
CAATTAGTGATCAAGAGGGGAGGGCCCATTGTGTGTGGTGCCATCCCTGG
GCTGATAGTCCAGGGTTCTATAAGAGAGCAGGCTGAACAAGTGAGGGAAA
GCAAGCCAGTAAGTAGCATCCCTCCATGGCCTCTGCACCTGCTCCTGCTT
CCTGACCTGCTTGAGTTTCAGTCCTGACTTCCTTTGGTGATAAACAGCAA
CGTGGTATAAGCTGAATAAATCCTTTCCTCCCCAACTTGCTTCTTAATCA
TGATGTTTGTGCAGGAATAGAAACCCTGACTAAGACACCCAGTGACACAC
GTACTCCAACAAGGGCACACCTCCTAGTCCCTGTCAAATAGCACCTAATG
ACCAAATATTCAAATATATGAGCCTTTGGGGACCATTCCTATTCAAACCA
TCACAGTATCTTCTGTAACGGTAATGAATGTGAAAGAGCAAGCCATTGAC
TGGAAGAAAATATCCATGATACCATGAATATGTCTGACAGAGGAATTGAT
A
NAACGTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTGCAAGAGCAC
AGTGATTTCTCATCCAATAAGCCATCGCTCCATCCCTGGCTCTGAGTTCC
TTACATCCAATTTGTCTGGAGTTAGGACAGACAAGTGTTACTGTCTCGAC
ATCACAGATGTGTGCCACTTGATCTCAGCTGTACCAACTAGTCTCCTCAG
TGGCCTCAGGACTCTCCTATCAGTGCTTACAGTATTATTACTACTCCTCG
ACTTCACTTTGCTGTCTCATAAGGTCACTGAGATCTGGCACCTTCCATCC
TGAAGAGGAAGCAGCCAAATTCATGTCAGTGAAAACACATCCAGGCAGCT
GTGTTTTACTCGCCAAGCACAGAAATAGGTTCTGCCCACAGAAGAGCTGA
GGCAGTGAGTGGGGCCCATTGCCAAGTCCTTAATGTCAATCTGGTCATGG
CGAATGCTATGACCTAGTAATGTGCCACATTACTATGTTGTATACATAGA
AGCCTTCCTACAGAGAAGCATTCCAAGCAGACCACATCCAAGTGGAGCAT
CCTGTAGCCAAGCTTCATGGCCGCAGCCATTGGCTTAGGGCCCTCTATGA
CCCAGTCACACAAATTCAACATTAAATACGGGCCTTAGAATGGCAGCAAC
CCAGCCAGGGGCTGCTGCACACTCAATTGCTAAAATGCAATGCCTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no528_e06.g1 MSMg01no528_e06.g1 CHROMAT_FILE:
MSMg01no528_e06.g1 PHD_FILE: MSMg01no528_e06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:49 2005
         (642 letters)



>mm_chr7_47957222_47958263
          Length = 1042

 Score = 1151 bits (595), Expect = 0.0
 Identities = 631/643 (98%), Gaps = 2/643 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctgcaagagcacagtgatttctcatccaataagccatcgctccatccctggctctgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctctgcaagagcacagtgatttctcatccaataagccatcgctccatccctggctctgag 260

                                                                       
Query: 61  ttccttacatccaatttgtctggagttaggacagacaagtgttactgtctcgacatcaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttccttacatccaatttgtctggagttaggacagacaagtgttactgtctcgacatcaca 320

                                                                       
Query: 121 gatgtgtgccacttgatctcagctgtaccaactagtctcctcagtggcctcaggactctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgtgtgccacttgatctcagctgtaccaactagtctcctcagtggcctcaggactctc 380

                                                                       
Query: 181 ctatcagtgcttacagtattattactactcctcgacttcactttgctgtctcataaggtc 240
           ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 ctatcagcgcttacagtattattactactcctcaacttcactttgctgtctcataaggtc 440

                                                                       
Query: 241 actgagatctggcaccttccatcctgaagaggaagcagccaaattcatgtcagtgaaaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actgagatctggcaccttccatcctgaagaggaagcagccaaattcatgtcagtgaaaac 500

                                                                       
Query: 301 acatccaggcagctgtgttttactcgccaagcacagaaataggttctgcccacagaagag 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acatccaagcagctgtgttttactcgccaagcacagaaataggttctgcccacagaagag 560

                                                                       
Query: 361 ctgaggcagtgagtggggcccattgccaagtccttaatgtcaatctggtcatggcgaatg 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 561 ctgaggcagtgagtggggcccattgccaagtccttaatgtcaatctggtcatggtgagtg 620

                                                                       
Query: 421 ctatgacctagtaatgtgccacatt-actatgttgtatacatagaagccttcctacagag 479
           ||||||||||||||||||||||||  | ||||| ||||||||||||||||||||||||||
Sbjct: 621 ctatgacctagtaatgtgccacatagaatatgt-gtatacatagaagccttcctacagag 679

                                                                       
Query: 480 aagcattccaagcagaccacatccaagtggagcatcctgtagccaagcttcatggccgca 539
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 680 aagcattccaagcagaccacatccaagtggagcatcctgcagccaagcttcatggccaca 739

                                                                       
Query: 540 gccattggcttagggccctctatgacccagtcacacaaattcaacattaaatacgggcct 599
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 740 gccattggcttagggccctctatgacacagtcacacaaattcaacattaaatacgggcct 799

                                                      
Query: 600 tagaatggcagcaacccagccaggggctgctgcacactcaatt 642
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tagaatggcagcaacccagccaggggctgctgcacactcaatt 842


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space:   652224
Effective search space used:   652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)