BAC Information

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BAC

Clone NameMSMg01-528K13
Chromosome7 (Build37)
Map Location 146,430,710 - 146,591,024
singlet/doubletdoublet
Overlap genePwwp2, Inpp5a
Upstream geneTcerg1l, LOC100043290, Mapk1ip1, Ppp2r2d, Bnip3, EG668784, LOC669185, 6330417G02Rik, Dpysl4, Stk32c, LOC100038956, Lrrc27
Downstream geneNkx6-2, E030019B06Rik, 9330101J02Rik, LOC100043472, EG434253, EG664869, Gpr123, LOC244229, Kndc1, Utf1, LOC100039095, 6430531B16Rik, Adam8, Tubgcp2, Zfp511, Msx3, Drd1ip, Prap1, 1810014F10Rik, Echs1, Paox, Mtg1, Sprn, Olfr522, Olfr523, Olfr524, E430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-528K13.T7 (MSMg01no528_k13.b1)MSMg01-528K13.TJ (MSMg01no528_k13.g1)
ACCAG597723AG597724
length737746
length of high quality
(start - end)		667 (71 - 737)654 (82 - 735)
definitionCHROMAT_FILE: MSMg01no528_k13.b1 PHD_FILE: MSMg01no528_k13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:19 2005CHROMAT_FILE: MSMg01no528_k13.g1 PHD_FILE: MSMg01no528_k13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,430,710 - 146,431,376)(146,590,366 - 146,591,024)
sequence
NNTTTCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCATCTCACAGACAGTTATTCCTCCCATCTTCTAGCTAAT
TTTTTAAATCATAAAATAGCTATGCTTTTCCGAGCTCTGTTGCCTCTACC
TTCCTCTTCATATGACACTTTAAATCCCAAGTAGTTCCCAAAAATGTTAA
AATACTAATGAACCATGGTTAAGGCTCACGTGTGTGTATGACCTTCAAAT
ATAGCTTCACTATATCTGGATAGAAACTTAAAAATTTGGGCAGAATCTCA
CAAAGATACCCATAAAAATTTTACATTAAATCCTCAACTTCCACATAACT
CTTGGGACCTAGGGTTTCACCTTTTCTGTTAACCTATCCAGTGCACATCA
GGAGCCATCTTGTCCTTAGGTGCTGAAGGAAAGGTTCCTTAGCAGCCTCT
GAGACATAACTTCAGACGTCACCAAATCCACCTTATTGTAAGGACGCCTG
GGTGTGAGTCTCTTAAGCGGACCACATACATGCTTGGGTCTGTCTCATTC
TTTTCCTGAGTGTCTTTCCCTCCCCACACCTCACTACTTAAACGTTAAAA
TCACCCCAATTCAGATCAATAGTAAAATGGATCTCTGAAGTCAGACTGCT
TGAAGTGGCAGCATGGGGCTGTGTTTCCAGCCCCTGCTCTAGGGCTGCTG
ACAGGCAGCCCTACTCCACCCCCTATCCCCACCCCCA

NTTGATCCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCCGTGAGTTTCTGCCT
TGATTTTTCCTTCATGGTGGACTGTGAGCTATAAGATGTCACAGATCCTT
TCTTCCCCAAGTTGCTTTTGGTCACGATGTAGAAACCTTGTTAGGACAGA
GGAAAACTCACTAGAACATGGCAACACTGCAGGTAGCAGGGTACAGAGGT
GCTGTGTTCTCTCACATGCTTGGAGCTTGGCAAAGTGCGGCAGGACAGCT
GGCTCAGGAGACACCAAGGCATTCATCCTTCTGTCGGAAACTGACCCTTA
CCTGGTGCCTGCTTATTCCATCTATTAAGTCAACAAAGGTGCCCCTGATG
AGGTTCTCCCAAGGTTTATGCAAACGTGAGCAAAACCTCAAACTGACTCA
GGGTGCTCAGAAAAAGGTGAACCCCTTCTCCCTGCAGAGGACACACAGTC
TGCTCAGCTGCTCTCACACATCAGCTTAGTGTGGGACAAAGCGGTGAAGG
CAGGAGGGTGAGATAGAACACTCAAGAAAGGCTCTGTGTGATTTAACCCT
GAATACAGCCAACACCAGAGGACAGAAGAAACCTGAGGATCCAAAAAATC
AGCAAGACTGGTGAGCCCGCAATAGACAGCCAGAGAAAGATGCAGCTACT
AACGTCATGAAGGAAAGTCGATCTGCTATCTCCAGCCTTACAGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no528_k13.b1 MSMg01no528_k13.b1 CHROMAT_FILE:
MSMg01no528_k13.b1 PHD_FILE: MSMg01no528_k13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:19 2005
         (667 letters)



>mm_chr7_146430510_146431576
          Length = 1067

 Score = 1236 bits (639), Expect = 0.0
 Identities = 660/667 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gacagttattcctcccatcttctagctaattttttaaatcataaaatagctatgcttttc 60
           ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 201 gacagttattcctcccatcttccggctaattttttaaatcataaaatagctatgcttttc 260

                                                                       
Query: 61  cgagctctgttgcctctaccttcctcttcatatgacactttaaatcccaagtagttccca 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 cgagctctgttgcctctaccttcctcttcatatgacattttaaatcccaagtagttccca 320

                                                                       
Query: 121 aaaatgttaaaatactaatgaaccatggttaaggctcacgtgtgtgtatgaccttcaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaatgttaaaatactaatgaaccatggttaaggctcacgtgtgtgtatgaccttcaaat 380

                                                                       
Query: 181 atagcttcactatatctggatagaaacttaaaaatttgggcagaatctcacaaagatacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagcttcactatatctggatagaaacttaaaaatttgggcagaatctcacaaagatacc 440

                                                                       
Query: 241 cataaaaattttacattaaatcctcaacttccacataactcttgggacctagggtttcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cataaaaattttacattaaatcctcaacttccacataactcttgggacctagggtttcac 500

                                                                       
Query: 301 cttttctgttaacctatccagtgcacatcaggagccatcttgtccttaggtgctgaagga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttttctgttaacctatccagtgcacatcaggagccatcttgtccttaggtgctgaagga 560

                                                                       
Query: 361 aaggttccttagcagcctctgagacataacttcagacgtcaccaaatccaccttattgta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaggttccttagcagcctctgagacataacttcagacgtcaccaaatccaccttattgta 620

                                                                       
Query: 421 aggacgcctgggtgtgagtctcttaagcggaccacatacatgcttgggtctgtctcattc 480
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 621 aggacgcctgggtgtgagtctcttaagtggaccacatacatgcttgggtctgtctcattc 680

                                                                       
Query: 481 ttttcctgagtgtctttccctccccacacctcactacttaaacgttaaaatcaccccaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttttcctgagtgtctttccctccccacacctcactacttaaacgttaaaatcaccccaat 740

                                                                       
Query: 541 tcagatcaatagtaaaatggatctctgaagtcagactgcttgaagtggcagcatggggct 600
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcagatccatagtaaaatggatctctgaagtcagactgcttgaagtggcagcatggggct 800

                                                                       
Query: 601 gtgtttccagcccctgctctagggctgctgacaggcagccctactccaccccctatcccc 660
           |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gtgtttccagaccctgctctatggctgctgacaggcagccctactccaccccctatcccc 860

                  
Query: 661 accccca 667
           |||||||
Sbjct: 861 accccca 867


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no528_k13.g1 MSMg01no528_k13.g1 CHROMAT_FILE:
MSMg01no528_k13.g1 PHD_FILE: MSMg01no528_k13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:19 2005
         (654 letters)



>mm_chr7_146590067_146591125
          Length = 1059

 Score = 1193 bits (617), Expect = 0.0
 Identities = 647/659 (98%), Gaps = 5/659 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgccgtgagtttctgccttgatttttccttcatggtggactgtgagctataagatgtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958 ttgccgtgagtttctgccttgatttttccttcatggtggactgtgagctataagatgtca 899

                                                                       
Query: 61  cagatcctttcttccccaagttgcttttggtcacgatgtagaaaccttgttaggacagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 cagatcctttcttccccaagttgcttttggtcacgatgtagaaaccttgttaggacagag 839

                                                                       
Query: 121 gaaaactcactagaacatggcaacactgcaggtagcagggtacagaggtgctgtgttctc 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 838 gaaaactcactagaacatggcaacgctgcaggtagcagggtacagaggtgctgtgttctc 779

                                                                       
Query: 181 tcacatgcttggagcttggcaaagtgcggcaggacagctggctcaggagacaccaaggca 240
           |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 778 tcacatgcttggagcttggcaaagtgtggcaggacagctggctcagaagacaccaaggca 719

                                                                       
Query: 241 ttcatccttctgtcggaaactgacccttacctggtgcctgcttattccatc----tatta 296
           |||||||||||||||||| ||||||||||||||||||||||||||||||||    |||||
Sbjct: 718 ttcatccttctgtcggaagctgacccttacctggtgcctgcttattccatctacatatta 659

                                                                       
Query: 297 agtcaacaaaggtgcccctgatgaggttctcccaaggtttatgcaaacgtgagcaaaacc 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 agtcaacaaaggtgcccctgatgaggttctcccaaggtttatgcaaacgtgagcaaaacc 599

                                                                       
Query: 357 tcaaactgactcagggtgctcagaaaaaggtgaaccccttctccctgcagaggacacaca 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tcaaactgactcagggtgctcagaaaaaggtgaaccccttctccctgcagaggacacaca 539

                                                                       
Query: 417 gtctgctcagctgctctcacacatcagcttagtgtgggacaaagcggtgaaggcaggagg 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gtctgctcagctgctctcacacatcagcttagtgtgggacaaagcggtgaaggcaggagg 479

                                                                       
Query: 477 gtgagatagaacactcaagaaaggctctgtgtgatttaaccctgaatacagccaacacca 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gtgagatagaacactcaagaaaggctctgtgtgatttaaccctgaatacagccaacacca 419

                                                                       
Query: 537 gaggacagaagaaacctgaggatcc-aaaaaatcagcaagactggtgagcccgcaataga 595
           ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 418 gaggacagaagaaacctgaggatccaaaaaaatcagcaagactggtgagccctcaataga 359

                                                                      
Query: 596 cagccagagaaagatgcagctactaacgtcatgaaggaaagtcgatctgctatctccag 654
           |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 358 cagccagagaaagatgcagctactaacgtcataaaggaaagttgatctgctatctccag 300


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1059
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1049
Effective search space:   675556
Effective search space used:   675556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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