Query= MSMg01no529_a14.b1 MSMg01no529_a14.b1 CHROMAT_FILE:
MSMg01no529_a14.b1 PHD_FILE: MSMg01no529_a14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:50 2005
(222 letters)
>mm_chr7_58689940_58690563
Length = 624
Score = 304 bits (157), Expect = 3e-87
Identities = 206/227 (90%), Gaps = 13/227 (5%)
Strand = Plus / Plus
Query: 5 gaattc-acacacttttcacaataaaagtcctgaagaaactaaagataagagaaaaacat 63
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 205 gaattcaacacacttttcacaataaaagtcctgaagaaactacggataagagaaaaccat 264
Query: 64 atctaaattgcagtaaatctggaaaaaaa-gaaaaactgagagcatttcttctaaaatct 122
||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 265 atctaaactgcagtaaatctgg-aaaaaaagaaaaactgagagcatttcttctaaaatct 323
Query: 123 gtttttt---ggggtttttt-gtttgtttgttttggttttttggtg------ttttttgt 172
||||||| |||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 324 gtttttttggggggtttttttgtttgtttgttttggttttttggtggtttttttttttgt 383
Query: 173 ttttgggtgggtttttgttttgttttggatttggttttggttttttt 219
|||| ||||| ||||||||||||||||| ||| ||||||||||||||
Sbjct: 384 tttttggtggttttttgttttgttttggtttttgttttggttttttt 430
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 624
Length adjustment: 9
Effective length of query: 213
Effective length of database: 615
Effective search space: 130995
Effective search space used: 130995
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no529_a14.g1 MSMg01no529_a14.g1 CHROMAT_FILE:
MSMg01no529_a14.g1 PHD_FILE: MSMg01no529_a14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:50 2005
(688 letters)
>mm_chr7_58882488_58883575
Length = 1088
Score = 1276 bits (660), Expect = 0.0
Identities = 681/688 (98%)
Strand = Plus / Minus
Query: 1 tggaggcctgaagacctgtcagcctctccctgcagaacctgaggataagccagggcatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 tggaggcctgaagacctgtcagcctctccctgcagaacctgaggataagccagggcatgg 829
Query: 61 gcccaggaagatgtaggtgagcattgagaagaaagcttgaaaaccggtctatgagctgac 120
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 828 gcccaggaagatgtaggtgagcactgagaagaaagcttgaaaaccggtctaggagctgac 769
Query: 121 ctgatggagccgatcgccctctagtctcaaaaaaccgtttgctggcataacggaggaagg 180
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 768 ctgatggagctgatcgccctctagtctcaaaaaaacgtttgctggcataacggaggaagg 709
Query: 181 gaggggttacacgtcagagatctgaaaaagggccccaggtctttatttgggatctgaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 gaggggttacacgtcagagatctgaaaaagggccccaggtctttatttgggatctgaaag 649
Query: 241 ccgtggggtcgggaggaacaaatgctcagcctcggttcagacttcaagaggtagggttag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ccgtggggtcgggaggaacaaatgctcagcctcggttcagacttcaagaggtagggttag 589
Query: 301 ccttgttgacttaattttttcattaaaatgtactactcaaggaagcaaacaaatgtctct 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ccttgttggcttaattttttcattaaaatgtactactcaaggaagcaaacaaatgtctct 529
Query: 361 tgtcctctggtagtcatgcctttttccttagtatcgccacccacaagtcttcatgcttcg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tgtcctctggtagtcatgcctttttccttagtatcgccacccacaagtcttcatgcttcg 469
Query: 421 ggttgtctctgtatgtgaaccatgggggaggggtgtccccagaaagctactgctaagatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 468 ggttgtctctgtatgtgaaccatgggggaggggtgtccccagaaagctactgctaggatt 409
Query: 481 tgggctccagacactgcggcacgactggaggtcggaggctgagggacgcagctgagccgt 540
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tgggctccagccactgcggcacgactggaggtcggaggctgagggacgcagctgagccgt 349
Query: 541 tcagttcatccccgcccccttatgcacagagctcattaacaggtggaatcctaccccgag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tcagttcatccccgcccccttatgcacagagctcattaacaggtggaatcctaccccgag 289
Query: 601 aaccctggatcccgcctgcgtccatagaaacaaatccttcagactcacaataccatctgg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 aaccctggatcccgcctgcgtccatagaaacaaatccttcagactcacaataccatctgg 229
Query: 661 gctagctcagggggggctagccattgac 688
||||||||||||||||||||||||||||
Sbjct: 228 gctagctcagggggggctagccattgac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space: 730884
Effective search space used: 730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
