BAC Information

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BAC

Clone NameMSMg01-529B12
Chromosome7 (Build37)
Map Location 82,699,182 - 82,833,347
singlet/doubletdoublet
Overlap geneAkap13
Upstream geneSlco3a1, EG665641, 0610006L08Rik, Sv2b, 1500012K07Rik, LOC100042171
Downstream geneKlhl25, LOC100042210, LOC434200, EG244071
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529B12.T7 (MSMg01no529_b12.b1)MSMg01-529B12.TJ (MSMg01no529_b12.g1)
ACCAG598055AG598056
length747731
length of high quality
(start - end)		693 (53 - 745)474 (79 - 552)
definitionCHROMAT_FILE: MSMg01no529_b12.b1 PHD_FILE: MSMg01no529_b12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:55 2005CHROMAT_FILE: MSMg01no529_b12.g1 PHD_FILE: MSMg01no529_b12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,832,895 - 82,833,347)(82,699,182 - 82,699,652)
sequence
NTTAAACCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCACTAATGATGGGCAGCTACATTCGTCTCCAGATCTTTT
GAATTAAATTTTCAGAGGACGCTGCAAAAACACCATAGACACCGGGAGCT
TGTGCTTAGTTCCCAGAACACCTGGCCCTGTAGTGAAGACCATGTGCATT
ACTCCCTTTCAGATTTAATCTTTGCACCAGGATCGCACACTCTAACTACT
CACTGAAGATCAATTTTTAAAACAGGTTCCTAGAGCTAGACAGATGGCTC
AGTGGTTAAGAGCAATGGCTGTTCTTCCACATAACCTGGGTTTGATTTCC
AGTACCTACATGGTAACTTACAGCTGTATCTGTGACTTCAGTTCCAGAGG
TGCCAATGCCCTCTTCTGGACTCTGTGAGCATGGCATGCATGTGGTGCAG
ATGTAAACGCAGGTAAAACACCCATACACATTACACAAAAATCTTAATAA
TAAAAAAAGGTTCCTTAAGGGAATAAGTTGGTAACAAATATTTATACAAT
TAAAATGCTTGAAAGCATTTTTTATGCACACAGGCCTTGTGTTTATAAAT
CCCACGTGTCAATATACCCTCGACAGCCAACTGACCTGCATTTGCACGAA
GTTTTAGTAGTCATTTTCAGATTTAATCTTCCTGTACTTAAGTAAAAATG
TTCTTCAGCTCTGTCTCTTGAGCTTGACATTTCTGACTGCTAGAATT

NNCCACTATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGCTGTCTCTCTTTGTTTTG
TCCACAGAAGGAAATGTGAGTTTTATCTTACTGCTTGGGCAATGGTACAT
TCCTTTTTTGGTTCATGAGACCCACCAGTCTGGATGTGGGTTCATTTCCT
ACCATTTTTGTTATCTTGCATTAGTTTAAAGATCAGGAATGAACATAACC
TACTCTTAATGAGCATAAAATTGGGAGGCATCTCTGGTGTACCAAAATTC
TATTTTGAGGTTTAGCTGACGTTGTCTAGTTCATCCTTGTATTAAGGAAA
TCCAGGGAGCAAACCCTAAGAAGCTAGGTCTACAGTTTTATCTTTCCCTT
ACTAAATCTGTTTTCTAGATCTCGGTGACATTCCTTATTCTTGCCACATC
TATGGGCATGATTAAACATTGTTTGTATCTTACTCAGAATTAACTGTTTT
TATTTCTTGACTAGGAGAGAGAGACAGATGTTTGAAGACATACTACACTT
GAGGTTGAAAACCATAGTTTTTCTGGATAGTATAGTTGAGAATACTGCCT
TTTTTTTCAGATGTGATATATTTGTGTGTGTGCAAATGTTCATGCACACT
AGTGCATATACACATACAGAAACGATTGCCAGAAAGGAAATTGTAGGTGG
TATCATATACACCTCTGAATATTTCATGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_b12.b1 MSMg01no529_b12.b1 CHROMAT_FILE:
MSMg01no529_b12.b1 PHD_FILE: MSMg01no529_b12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:55 2005
         (693 letters)



>mm_chr7_82832255_82833347
          Length = 1093

 Score =  845 bits (437), Expect = 0.0
 Identities = 449/453 (99%)
 Strand = Plus / Minus

                                                                        
Query: 241  gatggctcagtggttaagagcaatggctgttcttccacataacctgggtttgatttccag 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1093 gatggctcagtggttaagagcaatggctgttcttccacataacctgggtttgatttccag 1034

                                                                        
Query: 301  tacctacatggtaacttacagctgtatctgtgacttcagttccagaggtgccaatgccct 360
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1033 tacctacatgttaacttacagctgtatctgtgacttcagttccagaggtgccaatgccct 974

                                                                        
Query: 361  cttctggactctgtgagcatggcatgcatgtggtgcagatgtaaacgcaggtaaaacacc 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 973  cttctggactctgtgagcatggcatgcatgtggtgcagatgtaaacgcaggtaaaacacc 914

                                                                        
Query: 421  catacacattacacaaaaatcttaataataaaaaaaggttccttaagggaataagttggt 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913  catacacattacacaaaaatcttaataataaaaaaaggttccttaagggaataagttggt 854

                                                                        
Query: 481  aacaaatatttatacaattaaaatgcttgaaagcattttttatgcacacaggccttgtgt 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853  aacaaatatttatacaattaaaatgcttgaaagcattttttatgcacacaggccttgtgt 794

                                                                        
Query: 541  ttataaatcccacgtgtcaatataccctcgacagccaactgacctgcatttgcacgaagt 600
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 793  ttataaatcccacgtgtcaatataccctcgacagccaactgacctgcatttgcatgaagt 734

                                                                        
Query: 601  tttagtagtcattttcagatttaatcttcctgtacttaagtaaaaatgttcttcagctct 660
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 733  tttagtagtcattttcagatttaatcctcctgtacttaagtaaaaatgttcttcagctct 674

                                             
Query: 661  gtctcttgagcttgacatttctgactgctagaa 693
            ||||||||||||||| |||||||||||||||||
Sbjct: 673  gtctcttgagcttgaaatttctgactgctagaa 641


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space:   739689
Effective search space used:   739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no529_b12.g1 MSMg01no529_b12.g1 CHROMAT_FILE:
MSMg01no529_b12.g1 PHD_FILE: MSMg01no529_b12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:55 2005
         (474 letters)



>mm_chr7_82698982_82699855
          Length = 874

 Score =  888 bits (459), Expect = 0.0
 Identities = 468/471 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagctgtctctctttgttttgtccacagaaggaaatgtgagttttatcttactgcttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagctgtctctctttgttttgtccacagaaggaaatgtgagttttatcttactgcttgg 260

                                                                       
Query: 61  gcaatggtacattccttttttggttcatgagacccaccagtctggatgtgggttcatttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaatggtacattccttttttggttcatgagacccaccagtctggatgtgggttcatttc 320

                                                                       
Query: 121 ctaccatttttgttatcttgcattagtttaaagatcaggaatgaacataacctactctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaccatttttgttatcttgcattagtttaaagatcaggaatgaacataacctactctta 380

                                                                       
Query: 181 atgagcataaaattgggaggcatctctggtgtaccaaaattctattttgaggtttagctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgagcataaaattgggaggcatctctggtgtaccaaaattctattttgaggtttagctg 440

                                                                       
Query: 241 acgttgtctagttcatccttgtattaaggaaatccagggagcaaaccctaagaagctagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acgttgtctagttcatccttgtattaaggaaatccagggagcaaaccctaagaagctagg 500

                                                                       
Query: 301 tctacagttttatctttcccttactaaatctgttttctagatctcggtgacattccttat 360
           ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctgcaattttatctttcccttactaaatctgttttctagatctcggtgacattccttat 560

                                                                       
Query: 361 tcttgccacatctatgggcatgattaaacattgtttgtatcttactcagaattaactgtt 420
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 561 tcttgccacatctatgggcatgattaaacattgtttgtatcttactcaaaattaactgtt 620

                                                              
Query: 421 tttatttcttgactaggagagagagacagatgtttgaagacatactacact 471
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttatttcttgactaggagagagagacagatgtttgaagacatactacact 671


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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