Query= MSMg01no529_b23.b1 MSMg01no529_b23.b1 CHROMAT_FILE:
MSMg01no529_b23.b1 PHD_FILE: MSMg01no529_b23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:57 2005
(659 letters)
>mm_chr7_35566035_35567091
Length = 1057
Score = 1172 bits (606), Expect = 0.0
Identities = 642/654 (98%), Gaps = 4/654 (0%)
Strand = Plus / Plus
Query: 4 ggaattcacagtcgatctgggctctagagtgaagcaaagtcaaaacaaaattaagtgaaa 63
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 204 ggaattcacagtcgatctgggctctagagtgaagcaaagacaaaacaaaattaagtgaaa 263
Query: 64 agtactgaaggttaggacctagagagatgagtcagaggttaaagtgagcattgttcttac 123
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 264 agtactgagggttaggacctagagagatgagtcagaggttaaagtgatcattgttcttac 323
Query: 124 atgggacctgagttcagttcccagcatccacagcaggcagctcacaaccacacaactcca 183
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 324 acgggacctgagttcagttcccagcatccacagcaggcagctcactaccacacaactcca 383
Query: 184 gttccaggggcctggtgccctcttgtggtctccataggcactgcacccatgtgcacttac 243
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 384 gttccaggggcctggtgccctcttgtggtctccataggcacttcacccatgtgcacttac 443
Query: 244 ccctcctccacaaagacacatgtgcacacacaattaaaatgttttaaa-attttaaaggg 302
|||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 444 ccctcctccacagagacacatgtgcacacacaattaaaatgttttaaacattt-aaagga 502
Query: 303 atataagtaatctgatctataagatctggctctctttcacactcttttgtgttcagcaaa 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 atataagtaatctgatctataagatctggctctctttcacactcttttgtgttcagcaaa 562
Query: 363 cagaacacattttttccccaattgctcaaaaattattttgaaaacttggtttatgttgga 422
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 cagaacacattttt-ccccaattgctcaaaaattattttgaaaacttggtttatgttgga 621
Query: 423 ctacaaaaaaagaaacctcaatagaagtcattatctaaccaaaatgcaataagatcgaat 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ctacaaaaaaagaaacctcaatagaagtcattatctaaccaaaatgcaataagatcgaat 681
Query: 483 attaaaaaatgacagggaaaaatattggctatgacattgtttttgatggaagaaagtaga 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 attaaaaaatgacagggaaaaatattggctatgacattgtttttgatggaagaaagtaga 741
Query: 543 aattatacactcgaccttccctggggaaaggagagtcctgttttcaaaggctcgaagatg 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 aattatacactcgaccttccctggggaaaggagagtcctgttttcaaaggctcgaagatg 801
Query: 603 gagttaaagagccaggagccagaactgaagagttacagcatcacaatcgcaagc 656
|||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 802 gagttaaagagccaggagccagaactga-gagttacagcatcacaatcgcaagc 854
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1057
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1047
Effective search space: 679503
Effective search space used: 679503
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no529_b23.g1 MSMg01no529_b23.g1 CHROMAT_FILE:
MSMg01no529_b23.g1 PHD_FILE: MSMg01no529_b23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:57 2005
(578 letters)
>mm_chr7_35748417_35749394
Length = 978
Score = 835 bits (432), Expect = 0.0
Identities = 526/592 (88%), Gaps = 56/592 (9%)
Strand = Plus / Minus
Query: 6 aaaaaacaccatgatgggagtcggaggtgaggacagcaagtgctgtgcggagtgcggtgt 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 aaaaaacaccatgatgggagtcggaggtgaggacagcaagtgctgtgcggagtgcggtgt 733
Query: 66 gggaggtgatgtggggtcctgcagcctcagcttgtgaggggaagatggtacacgaagttc 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 gggaggtgatgtggggtcctgcagcctcagcttgtgaggggaagatggtacacgaagttc 673
Query: 126 ccagagcaggccacaaacagggcccttgtgtggcaagctggcaaaaggaagccaggggag 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 ccagagcaggccacaaacagggcccttgtgtggcaagctggcaaaaggaagccaggggag 613
Query: 186 agccaagagaaccacagcactaaaagcatcctgtgagggatgggagg------------c 233
|||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 612 agccaaaagaaccacagcactaaaagcatcctgtgagggatgggaggtgggatggtgggc 553
Query: 234 gggatggcgggcgggattttgatctacagtccctatactatttcctcattatgggagtct 293
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gggatggcgggcaggattttgatctacagtccctatactatttcctcattatgggagtct 493
Query: 294 ctcactcttttaatacaatttgttagcatatattaattatacaaaataatgggtctcatt 353
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ctcattcttttaatacaatttattagcatatattaattatacaaaataatgggtctcatt 433
Query: 354 ttgacattttt------tttttttaatagtagtgcaggccagccttgaactcatgaatct 407
||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 432 ttgacatttttgtattattttttttatagtagtgcaggccagccttgaactcatgaatct 373
Query: 408 ctggttgacttagcctcctaggtgaagggattaaaggcatgactgtcatgcctagtttca 467
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 372 ctggttgagttagcctcctaggtgacgggattaaaggcatgactgtcatgcctagtttca 313
Query: 468 tttatacatgtgtgtaacgtgctttgacaatctgacctttccactgtcctttcctgccct 527
|||||||||||||||||| ||||
Sbjct: 312 tttatacatgtgtgtaacatgct------------------------------------- 290
Query: 528 catgctgaaccacctcgtcttcctaaatagtccccc-cacacacacacacac 578
|||||||||||||||||||||||||||||||| | | |||||||||||||||
Sbjct: 289 catgctgaaccacctcgtcttcctaaatagtcacacacacacacacacacac 238
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space: 549824
Effective search space used: 549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
