BAC Information

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BAC

Clone NameMSMg01-529D05
Chromosome7 (Build37)
Map Location 109,765,082 - 109,765,729
singlet/doubletsinglet
Overlap genenone
Upstream geneClpb, Phox2a, Inppl1, Folr2, Folr1, 3200002M19Rik, F930017I19Rik, 2400001E08Rik, Lrrc51, LOC667222, Numa1, Il18bp, Rnf121, Trpc2, Art5, Art1, Chrna10, Nup98, Frag1, Rhog, Stim1, Rrm1, Olfr543, Olfr544, Olfr545, LOC667284, Olfr547, Olfr548-ps1, Olfr549, Trim21, LOC384699, Olfr550, Olfr551, Olfr552, Olfr553
Downstream geneOlfr554, LOC100040840, Olfr555, Olfr556, Trim68, Olfr557, Olfr558, Olfr33, Olfr559, Olfr78, Olfr560, Olfr561, Olfr562-ps1, Olfr563-ps1, Olfr564, Olfr565-ps1, Olfr566, GA_x5J8B7W5P47-379997-380552, Olfr567-ps1, Olfr568, Olfr569, Olfr570, Olfr571, Olfr572, Olfr573-ps1, Olfr574, Olfr575, Olfr576, Olfr577, Olfr578, Olfr1527-ps1, Olfr579-ps1, Olfr580-ps1, Olfr581-ps1, Olfr582, Olfr583, Olfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589, Olfr590-ps1, Olfr591, Olfr592, Olfr593, Olfr594, Olfr595-ps1, Usp17, Dub2a, LOC100041187, Olfr597, GA_x5J8B7TU1BB-380-666, Olfr598, Olfr599, Olfr600, Olfr601, Olfr602-ps1, Olfr604, Olfr596-ps1, Dub2, Olfr605, Olfr606, EG546989, Olfr608, Olfr609, Olfr610, Olfr611, EG545985, Olfr614, Olfr615, Olfr616, LOC100042167, Olfr617, Olfr618, Olfr619, Olfr620
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529D05.T7 (MSMg01no529_d05.b1)MSMg01-529D05.TJ (MSMg01no529_d05.g1)
ACCAG598136AG598137
length730729
length of high quality
(start - end)		665 (45 - 709)646 (84 - 729)
definitionCHROMAT_FILE: MSMg01no529_d05.b1 PHD_FILE: MSMg01no529_d05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:04 2005CHROMAT_FILE: MSMg01no529_d05.g1 PHD_FILE: MSMg01no529_d05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCAAAATATACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAG
AGGATCCGCGGAATTCTCACCTGATGAATACTGAATGACTAAGAAACACC
TGAAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGCAAATCAAAAC
AACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATT
CAGTTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTC
CATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGAAAATCAGTCTG
GCGGTCCCTCAGAAAATTGGACAAAGTACTACCAGAGGATCCTGCAATAC
CTCTCCTGGGCATATATCCAGAAGATGTTCCAACCGGTAAAAGAAAGACA
CATGCTCCACTATGTTCATAGCAGCCTGATATAGGATACAATTTGTGAAG
CACAGGAGACTCAGGAGGAACGAAGACCAGGGTGTGGACACTTTGCTGCT
TCTTAGAATTGGGAGCAGAACGCCCATTGAGGGAGTTGCAGGGACGAAGT
TTGGAGCTGAGATGAAGTGGTGGTCCATCTAGACTGCCATATCTGGGAAT
CCATCCCCTAATCAGCCTCCAAATGCTGACATCATTGCATACACTATCAG
GATTTTGCTGAAAGGACCCTGATATAGCTCTCTTGTGAGACTATGTTCGG
GCCTGGCAAACACAGAAGTGGATGCTTACA

NTTATTTTTCTATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCTTAGATCAACCAGT
TAGTAAAGGGAAGGCAGGTCTAGGAGGCTGCTCAGGGAACCAAATTACTA
ACGTGTCAGATTTGTTATCCCAGACCTTTATTGTACTCAGCAATTTATTT
GAAGCCTCCTTTTCCATACGTAAAACAGGAACAATGTTTACTGCAAATGA
AAGGTGTATGGCAAGAAGACAGGGGCTTTGATATGATAGCAGATGCCTCC
CCCTGAAACTCAATATGAGTAGCAGACTGTGAACTATGCACATTTAACAA
TAGGGAATATTTCTCCGTGCTTGTTACATCTCAGAGGATGCTTTCAACGT
GCAGGAATAGGTTAGATGGATCAAGCTTTAAGGCAGTGCTTAGTCAATAA
CAGAATTTTAAAACTGGGAAATGGTTGATGTGTACTTTGAATGAATAATG
TATCAAAGCAGAGAGCAGCTCATTTACTCAATTTCAGGGAACATCAGAAT
AGTGACTACTTGTTACGAAAGACTGAGTCCAGGGATGGTCCTGGCTGTAG
CCTCTTTCTTTGATTTGTGTCTGACATAGTTCAGCCAATGAAGCAGTAAT
TGAGCTTTAGGCTAGGACAAAGAGTGTTGAAAAAAATACCAATGCTATGT
TTCCATTTCACATTTACAGCTGTCACCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_d05.g1 MSMg01no529_d05.g1 CHROMAT_FILE:
MSMg01no529_d05.g1 PHD_FILE: MSMg01no529_d05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:04 2005
         (646 letters)



>mm_chr7_109764882_109765929
          Length = 1048

 Score = 1166 bits (603), Expect = 0.0
 Identities = 637/649 (98%), Gaps = 4/649 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gccttagatcaaccagttagtaaagggaaggcaggtctaggaggctgctcagggaaccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 201 gccttagatcaaccagttagtaaagggaaggcaggtctaggaggctgctcagggagctaa 260

                                                                       
Query: 61  attactaacgtgtcagatttgttatcccagacctttattgtactcagcaatttatttgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attactaacgtgtcagatttgttatcccagacctttattgtactcagcaatttatttgaa 320

                                                                       
Query: 121 gcctccttttccatacgtaaaacaggaacaatgtttactgcaaa-tgaaaggtgtatggc 179
           |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 321 gcctccttttccatacgtaaaacaggaacaatgtttactgcaaact-aaaggtgtatggc 379

                                                                       
Query: 180 aagaagacaggggctttgatatgatagcagatgcctccccctgaaactcaatatgagtag 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aagaagacaggggctttgatatgatagcagatgcctccccctgaaactcaatatgagtag 439

                                                                       
Query: 240 cagactgtgaactatgcacatttaacaatagggaatatttctccgtgcttgttacatctc 299
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cagactgtgaactacgcacatttaacaatagggaatatttctccgtgcttgttacatctc 499

                                                                       
Query: 300 agaggatgctttcaacgtgcaggaataggttagatggatcaagctttaaggcagtgctta 359
           |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 500 agaggatgctttgaacgtgcaggaataggttagatggaccaagctttaaggcagtgctta 559

                                                                       
Query: 360 gtcaataacagaattttaaaactgggaaatggttgatgtgtactttgaatgaataatgta 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gtcaataacagaattttaaaactgggaaatggttgatgtgtactttgaatgaataatgta 619

                                                                       
Query: 420 tcaaagcagagagcagctcatttactcaatttcagggaacatcagaatagtgactacttg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tcaaagcagagagcagctcatttactcaatttcagggaacatcagaatagtgactacttg 679

                                                                       
Query: 480 ttacgaaagact--gagtccagggatggtcctggctgtagcctctttctttgatttgtgt 537
           | ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tcacgaaagactctgagtccagggatggtcctggctgtagcctctttctttgatttgtgt 739

                                                                       
Query: 538 ctgacatagttcagccaatgaagcagtaattgagctttaggctaggacaaagagtgttga 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ctgacatagttcagccaatgaagcagtaattgagctttaggctaggacaaagagtgttga 799

                                                            
Query: 598 aaaaaataccaatgctatgtttccatttcacatttacagctgtcaccat 646
           |||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 800 aaaaaatacccatgctatgtttccatttcatatttacagctgtcaccat 848


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1048
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1038
Effective search space:   660168
Effective search space used:   660168
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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