BAC Information

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BAC

Clone NameMSMg01-529H12
Chromosome7 (Build37)
Map Location 47,272,523 - 47,427,610
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100038955, LOC100038967, LOC620018, LOC100038914, EG668531, EG628058, EG668618, EG330513, EG434168, 9430025M13Rik, LOC100038985, 3000002G13Rik, EG215208, LOC100039133, LOC100039050, EG668540, 4930558N11Rik
Downstream geneEG628161, LOC100039094, 2900093B09Rik, 4930433I11Rik, EG233164, LOC668555, EG627987, LOC100039269
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529H12.T7 (MSMg01no529_h12.b1)MSMg01-529H12.TJ (MSMg01no529_h12.g1)
ACCAG598342AG598343
length751746
length of high quality
(start - end)		695 (49 - 743)668 (77 - 744)
definitionCHROMAT_FILE: MSMg01no529_h12.b1 PHD_FILE: MSMg01no529_h12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:27 2005CHROMAT_FILE: MSMg01no529_h12.g1 PHD_FILE: MSMg01no529_h12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(47,272,523 - 47,273,213)(47,426,943 - 47,427,610)
sequence
NNCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCCATTTGGAGGGCTGGGCTTTTCCTTGGGCGGATACAGGAG
CTTTAGTCTTCCCTTTGCCTCAGATTTCTAGAAAGATTCAAATTTCTTGA
GGTCATTGTTTCAGTTTGGGGGACATGTGTACCTCTTAAGAATAGTCTCC
ATTTCTTCCAGGGCATTTGTACCATTTTCTCAGTCGAACTGAGAAGACCT
TCTGTTGGCTGGCTGTGTTGCTATATTTGGATTATAAATATTCAGCCTTG
AGTCCAAATATTACTTTTAATCCAACATCATCAAAAGTAAAGATGATGTA
TATGTTTGTGTGTATTCATATATACATCTCAATTTATTCATAGCCTAGAA
TGGTTAGAGATAGATCATTGCATCTCTTGAGCCCTAACAGCAGCTCACAC
AGATGTAGGCTATCTTGGTTGCTACCTCCCCTTGGTGCTCATCATGTCTG
AGGGGAGGTGAGATCCCCACACACTCCTTCTGACCTCCTGATTGAATGCT
ATTTCTCATGAACTCTGTCTGAAGACTTGTCATTTGTCATGAGAACATGA
TTTCCTCCTGATTCCCAATGTCTCAAATATTTCACGTCCTCCTTTTGGTC
CCCTCATAACAAAGTCATACTGTCTTCCAGGAAAACGTAAGAACAGCTGT
CTCTTAATCTACATGAACTTAGTCATTGGAGTCTGAACCATCTCACATGT
G

NCCCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTACTTTGGATACATTATCACTG
TCCACAGGTATTCCTGAAGGTCCAAGTGTTGGAGGCTTGCTATTACAGAT
AGAAAGATTAGGGGATGGTTGGAAACTCTAATGACAGGCACTCCTTTAGG
TCATGAAGGAGTGCCCTTTAAATTGGTTTAAGATTTACGTGTTCTTCATA
TTGCCTTTCTGGATCAACTTACGATAACCTTGCTGGGAAATCCCCCTCAG
CACTCTGCTTTGAGATATGACCCTTGATCCACAACTCTCCTGTGATGCAT
CTCCCTATGAAGTGCTTCAGTGATGGCATCACCAAGGCCCATAGCATTTG
TTTGAATTTTAAACCTCCACAAGTGAGATACGCAAATCTCTTTCCCTTAT
AAATTTAGCCCGTGTCAGCTTTTTCATGAGAGCCATGAAAGGCTGGTTAA
TATACTAAATTATATGTCATAGACAACTTTAAGTGTTAACAAGGAACTTT
TTTTAAGGTGCCAAAGCCTTATCTGAAGGGTAGAGTTCCTTTGGGAGAAT
TTGAGATTGCTTAGTAGGGGATTGGCTTAGAAGAATGATGCCCAGTGATT
AATTCTTCCAGGACAATTCACATAGCATCTGAGTGACTATCGTGAAAAAG
GAACATTTCATCTGGGAGACCCTGGGAACTCCTTGATTTGTGTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_h12.b1 MSMg01no529_h12.b1 CHROMAT_FILE:
MSMg01no529_h12.b1 PHD_FILE: MSMg01no529_h12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:27 2005
         (695 letters)



>mm_chr7_47272319_47273413
          Length = 1095

 Score = 1336 bits (691), Expect = 0.0
 Identities = 691/691 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccatttggagggctgggcttttccttgggcggatacaggagctttagtcttcc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccatttggagggctgggcttttccttgggcggatacaggagctttagtcttcc 264

                                                                       
Query: 65  ctttgcctcagatttctagaaagattcaaatttcttgaggtcattgtttcagtttggggg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctttgcctcagatttctagaaagattcaaatttcttgaggtcattgtttcagtttggggg 324

                                                                       
Query: 125 acatgtgtacctcttaagaatagtctccatttcttccagggcatttgtaccattttctca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acatgtgtacctcttaagaatagtctccatttcttccagggcatttgtaccattttctca 384

                                                                       
Query: 185 gtcgaactgagaagaccttctgttggctggctgtgttgctatatttggattataaatatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtcgaactgagaagaccttctgttggctggctgtgttgctatatttggattataaatatt 444

                                                                       
Query: 245 cagccttgagtccaaatattacttttaatccaacatcatcaaaagtaaagatgatgtata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagccttgagtccaaatattacttttaatccaacatcatcaaaagtaaagatgatgtata 504

                                                                       
Query: 305 tgtttgtgtgtattcatatatacatctcaatttattcatagcctagaatggttagagata 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgtttgtgtgtattcatatatacatctcaatttattcatagcctagaatggttagagata 564

                                                                       
Query: 365 gatcattgcatctcttgagccctaacagcagctcacacagatgtaggctatcttggttgc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gatcattgcatctcttgagccctaacagcagctcacacagatgtaggctatcttggttgc 624

                                                                       
Query: 425 tacctccccttggtgctcatcatgtctgaggggaggtgagatccccacacactccttctg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tacctccccttggtgctcatcatgtctgaggggaggtgagatccccacacactccttctg 684

                                                                       
Query: 485 acctcctgattgaatgctatttctcatgaactctgtctgaagacttgtcatttgtcatga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acctcctgattgaatgctatttctcatgaactctgtctgaagacttgtcatttgtcatga 744

                                                                       
Query: 545 gaacatgatttcctcctgattcccaatgtctcaaatatttcacgtcctccttttggtccc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gaacatgatttcctcctgattcccaatgtctcaaatatttcacgtcctccttttggtccc 804

                                                                       
Query: 605 ctcataacaaagtcatactgtcttccaggaaaacgtaagaacagctgtctcttaatctac 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ctcataacaaagtcatactgtcttccaggaaaacgtaagaacagctgtctcttaatctac 864

                                          
Query: 665 atgaacttagtcattggagtctgaaccatct 695
           |||||||||||||||||||||||||||||||
Sbjct: 865 atgaacttagtcattggagtctgaaccatct 895


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1095
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1085
Effective search space:   743225
Effective search space used:   743225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no529_h12.g1 MSMg01no529_h12.g1 CHROMAT_FILE:
MSMg01no529_h12.g1 PHD_FILE: MSMg01no529_h12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:27 2005
         (668 letters)



>mm_chr7_47426743_47427810
          Length = 1068

 Score = 1268 bits (656), Expect = 0.0
 Identities = 665/668 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtactttggatacattatcactgtccacaggtattcctgaaggtccaagtgttggaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 agtactttggatacattatcactgtccacaggtattcctgaaggtccaagtgttggaggc 809

                                                                       
Query: 61  ttgctattacagatagaaagattaggggatggttggaaactctaatgacaggcactcctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 ttgctattacagatagaaagattaggggatggttggaaactctaatgacaggcactcctt 749

                                                                       
Query: 121 taggtcatgaaggagtgccctttaaattggtttaagatttacgtgttcttcatattgcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 taggtcatgaaggagtgccctttaaattggtttaagatttacgtgttcttcatattgcct 689

                                                                       
Query: 181 ttctggatcaacttacgataaccttgctgggaaatccccctcagcactctgctttgagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 ttctggatcaacttacgataaccttgctgggaaatccccctcagcactctgctttgagat 629

                                                                       
Query: 241 atgacccttgatccacaactctcctgtgatgcatctccctatgaagtgcttcagtgatgg 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 628 atgacccttgatccacaactctcctctgatgcatctccctatgaagtgcttcagtgatgg 569

                                                                       
Query: 301 catcaccaaggcccatagcatttgtttgaattttaaacctccacaagtgagatacgcaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 catcaccaaggcccatagcatttgtttgaattttaaacctccacaagtgagatacgcaaa 509

                                                                       
Query: 361 tctctttcccttataaatttagcccgtgtcagctttttcatgagagccatgaaaggctgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tctctttcccttataaatttagcccgtgtcagctttttcatgagagccatgaaaggctgg 449

                                                                       
Query: 421 ttaatatactaaattatatgtcatagacaactttaagtgttaacaaggaactttttttaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ttaatatactaaattatatgtcatagacaactttaagtgttaacaaggaactttttttaa 389

                                                                       
Query: 481 ggtgccaaagccttatctgaagggtagagttcctttgggagaatttgagattgcttagta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ggtgccaaagccttatctgaagggtagagttcctttgggagaatttgagattgcttagta 329

                                                                       
Query: 541 ggggattggcttagaagaatgatgcccagtgattaattcttccaggacaattcacatagc 600
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ggggattgacttagaagaatgatgcccagtgattaattcttccaggacaattcacatagc 269

                                                                       
Query: 601 atctgagtgactatcgtgaaaaaggaacatttcatctgggagaccctgggaactccttga 660
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 268 atctgagtgactatcgtgaaaaacgaacatttcatctgggagaccctgggaactccttga 209

                   
Query: 661 tttgtgtt 668
           ||||||||
Sbjct: 208 tttgtgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space:   696164
Effective search space used:   696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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