BAC Information

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BAC

Clone NameMSMg01-530B10
Chromosome7 (Build37)
Map Location 101,550,238 - 101,550,862
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666783, EG638305, EG545982
Downstream geneEG666816, LOC100040132
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-530B10.T7 (MSMg01no530_b10.b1)MSMg01-530B10.TJ (MSMg01no530_b10.g1)
ACCAG598812AG598813
length775783
length of high quality
(start - end)
698 (48 - 745)625 (76 - 700)
definitionCHROMAT_FILE: MSMg01no530_b10.b1 PHD_FILE: MSMg01no530_b10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:17 2005CHROMAT_FILE: MSMg01no530_b10.g1 PHD_FILE: MSMg01no530_b10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCACCTGAAGAATACCGAATGGCTGAGAAGCACCTGAAAGAAT
GTTCAGCATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGA
TTCTACCTCACACCAGTCACAATGGCTAAGATCAAAAATTCAGGTAAGAG
CAGATTCTGGCTAGGATGTGGAGAAAGAGGAATACTCCTCCATTTTTGAT
GGGATTGCAAGCCTGTACAACCACTCTGGCAATCAGTCTAGCCATTCCTC
AGAAAATTGGACATAGTACTACCAGAGGATCCTGCAATACCTGTCCTGGG
TATCTATCCAGAAGATTTTCCAACTGGTAAGAAGGACACATGCTCCACTA
TGTTCATAGCAGCTTTATTTATAATAACCAGAAGGTGGAAAGAAGCCAGA
TGCCCCTCAACAGAGAAATGGATATAGAAAATGTGGTACATTTACAGAAT
GGAGTACTACTCAGATATTAAAAAGAACGAATTTATGAAATTCCTAGGCA
AATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAG
AAGAACTCACATGAAATGTACTCACTGTTAAGTGAATATTAGCCCAGAAA
CTTAGAATATCCAAGAGACAATATACAATTTGCAAAACAGATGAAACTCA
AGAAGAACGAAGACCAAAGTGTGGTCACTTTGCCCATTCTTAGAATTGGG
AACAAAACACCCACTGAAGGAGTGA
NGCATTGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTGTTTTTAATAGCTGACTTGTAC
TCCATGGTGTAAATATACGAGTTTTTCTGTATCCATTCCTCTGTTGAGGG
ACATCTCAGTTGTTTCCAGTATGGCTACTATGAATATAGTAGGGCATGTG
TCCTTATTGCATGTTGGAGTATCTCTGGCTATAGGCCCAGGAGAGGTATA
GCTGGGTCCTCAGGTAAGTAATAAAAGGCTTTGCTAAAAGAATTCTGGGA
TGGAATTTTGTGGAATGTTCTTCTTGTCATCATAGGATTTCATGGTGTAT
TTTGTCATTTTGTACTTAGTTTATCTATCCAAGTTAGTTTAATAACTTTA
TTGACTCTTGATCATTTCCTAATTTCAATTCCATACACAATACTAACTTT
AGTCTATTTATTGTTTATATTATATATTTATTCTTTAGATAAGGTTTATT
CAGTGTCTGCCTCTATTCCATGTATAAAAGTAGGAGTCATAAAATAAAGC
CATGGTGTTCTGCTCATACCTATCGAATTTTAAAACACTGCCTTGCTCCG
TGTACATTTTAATCAAATGATAAGCTAATTATGACCATGTTTGTAGCTCA
GATACTTTTTAAACAATTGCATTTTGACTTGTTTAATATTACATTCCACC
TTAAAAATATGTCACATTTCTCTAGTAAAATTAGCCCTAAACAAACTAAA
TTTACTTATATCAACGTGGATAAGAAAGATACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no530_b10.g1 MSMg01no530_b10.g1 CHROMAT_FILE:
MSMg01no530_b10.g1 PHD_FILE: MSMg01no530_b10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:17 2005
         (625 letters)



>mm_chr7_101550097_101551121
          Length = 1025

 Score = 1193 bits (617), Expect = 0.0
 Identities = 623/625 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgtttttaatagctgacttgtactccatggtgtaaatatacgagtttttctgtatcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 attgtttttaatagctgacttgtactccatggtgtaaatatacgagtttttctgtatcca 707

                                                                       
Query: 61  ttcctctgttgagggacatctcagttgtttccagtatggctactatgaatatagtagggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ttcctctgttgagggacatctcagttgtttccagtatggctactatgaatatagtagggc 647

                                                                       
Query: 121 atgtgtccttattgcatgttggagtatctctggctataggcccaggagaggtatagctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 atgtgtccttattgcatgttggagtatctctggctataggcccaggagaggtatagctgg 587

                                                                       
Query: 181 gtcctcaggtaagtaataaaaggctttgctaaaagaattctgggatggaattttgtggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gtcctcaggtaagtaataaaaggctttgctaaaagaattctgggatggaattttgtggaa 527

                                                                       
Query: 241 tgttcttcttgtcatcataggatttcatggtgtattttgtcattttgtacttagtttatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tgttcttcttgtcatcataggatttcatggtgtattttgtcattttgtacttagtttatc 467

                                                                       
Query: 301 tatccaagttagtttaataactttattgactcttgatcatttcctaatttcaattccata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tatccaagttagtttaataactttattgactcttgatcatttcctaatttcaattccata 407

                                                                       
Query: 361 cacaatactaactttagtctatttattgtttatattatatatttattctttagataaggt 420
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 406 cacaatactaactttagtctgtttattgtttatattatatatttattctttagataaggt 347

                                                                       
Query: 421 ttattcagtgtctgcctctattccatgtataaaagtaggagtcataaaataaagccatgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ttattcagtgtctgcctctattccatgtataaaagtaggagtcataaaataaagccatgg 287

                                                                       
Query: 481 tgttctgctcatacctatcgaattttaaaacactgccttgctccgtgtacattttaatca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tgttctgctcatacctatcgaattttaaaacactgccttgctccgtgtacattttaatca 227

                                                                       
Query: 541 aatgataagctaattatgaccatgtttgtagctcagatactttttaaacaattgcatttt 600
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 aatgatgagctaattatgaccatgtttgtagctcagatactttttaaacaattgcatttt 167

                                    
Query: 601 gacttgtttaatattacattccacc 625
           |||||||||||||||||||||||||
Sbjct: 166 gacttgtttaatattacattccacc 142


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)