BAC Information

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BAC

Clone NameMSMg01-530L03
Chromosome7 (Build37)
Map Location 124,635,114 - 124,635,407
singlet/doubletsinglet
Overlap geneXylt1
Upstream geneNucb2, LOC100043320, EG668484, LOC668485, LOC546993, LOC100043330
Downstream geneLOC669758, Rps15a, Arl6ip1, 2610207I05Rik, LOC100043339, Syt17, LOC100042845, E030018N11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-530L03.T7 (MSMg01no530_l03.b1)MSMg01-530L03.TJ (MSMg01no530_l03.g1)
ACCAG599272AG599273
length780785
length of high quality
(start - end)
298 (47 - 344)42 (74 - 115)
definitionCHROMAT_FILE: MSMg01no530_l03.b1 PHD_FILE: MSMg01no530_l03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:06 2005CHROMAT_FILE: MSMg01no530_l03.g1 PHD_FILE: MSMg01no530_l03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTCATTTTCTACTGCTCTCTAGTCAGCCCACTGGTATTTCTAC
TTTGGTGAATTTATTTAAAAAAGAAACATTACCCATATATTGGAAGGAAA
ACTAATCTAATTTGCCACAAATGAGATGTAAGTAGGAAAATACACACTGA
GCTATTAATGTCTTTAAAGTTTGCTCCTGCTGTTCGTAAACTCGTCTTGT
GAGTCACCAGCTTCCTCCCAACACACCGTGAAAGGCTGCTGACGAGATGG
GGAGTCTTGAGTTTGTTCTGGATGGAAGGGGGCAGGAACCAAGGACTAGA
AGAAGCATCCAGGGTGGGTGCCTGGTCTACGGGAAAAGGTGGAGGTGAGC
CAATGGTGGATACCGCTGCAACTGAAGTTTTGTGCTGAGACCTAACTTGC
TGGGCTGTGGAGTTATGATTCTTTTCAAAGCAAGGACAGAAATGGTAGTG
TTTGAGTCACCTCCAGAAAGCCAGGTGGCCAGGCACTAACAACACCTCCC
AGAGTGTCCAGCACTGTGCTCCGACTGCTTTTCCAGCAGGAGAAGTAAAA
CAATCTAATTTCCTAGATAATGCTACATTATGAGCGAATGTCTAGTGTCT
GATAGAGATTAACAGACAGGGAACAGAAAGAGATCAGTGGCCAATGGCAA
TCAAGGGACACTGATCATATATCCCTATGGCTTGCTGGCATGGGAAATGT
GTGTGAGAGCGTGTCTGTGTGTGTGATGTN
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTTTGATTTGTATTAATTTATCTTTA
ATTTATCCTTTATTAGCTAGAAATAACTGCTTAGGAGAAAACTGATATGG
AAGGAGACAGGAGTGTAATTCATTGGCTGTGCAAGGAAAGAGCTGGAGAT
TTATGGGAAAAGTTTTGTGTATCTGGAGGAGGCAAATTTCAGGCAGAAGG
AATTAAAGTTCAAAAGGCCCTGAGATGGGAACGAGCTTGCTAGTGTGGCG
GTAGTAGAGGGGACCTGGGTGGAGAGATCATAACAAGGAACGGCACACGG
CTGGAGAGGCCTCTAAGAGTTGTGCTGGATCCTGGCAGAGTGGGCTCTGG
GAAATGAGAATGAAAATCTGCATCCTTCAAGCCTGCATCTCACACACTGG
CAGTGTGAGAACAGAGTGCTAGCATACATTACCAAGAGCGAGGCTCAATG
CTACTCAACATCCAAGCAGCCTGGCTTTAAGACACCCCGAAAGCCAAACT
CCAGTTGGCTACAAACTCCATTCCCATTGTAACCTCTGAAGTCAATGTTC
CAGTGACTGCAAACCCTTTTCCAACAGAAGATAGATGCGACATCTGCTGA
CAGTTGAAGCTGGCAAGGCTGAGAACCCACAAGGAATTACCAAAAATACC
CAAATCCCTGTTCTTAAGGGAATTCTTAAGGGAAACAATGAGACTCTCTA
TCCTGTTCACCAGACTTGTAGTCTTCTTTACTACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no530_l03.b1 MSMg01no530_l03.b1 CHROMAT_FILE:
MSMg01no530_l03.b1 PHD_FILE: MSMg01no530_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:06 2005
         (298 letters)



>mm_chr7_124634910_124635607
          Length = 698

 Score =  530 bits (274), Expect = e-155
 Identities = 289/294 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttcattttctactgctctctagtcagcccactggtatttctactttggtgaat 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gaattctttcattttctagtgctctctagtcagcccactggtatttctactttggtgaat 439

                                                                       
Query: 65  ttatttaaaaaagaaacattacccatatattggaaggaaaactaatctaatttgccacaa 124
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 438 ttatttaaaaaagaaacattacccatatattggaaggaaaactagtctaatttgccacaa 379

                                                                       
Query: 125 atgagatgtaagtaggaaaatacacactgagctattaatgtctttaaagtttgctcctgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 atgagatgtaagtaggaaaatacacactgagctattaatgtctttaaagtttgctcctgc 319

                                                                       
Query: 185 tgttcgtaaactcgtcttgtgagtcaccagcttcctcccaacacaccgtgaaaggctgct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tgttcgtaaactcgtcttgtgagtcaccagcttcctcccaacacaccgtgaaaggctgct 259

                                                                 
Query: 245 gacgagatggggagtcttgagtttgttctggatggaagggggcaggaaccaagg 298
           || |||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 258 gaggagaaggggagtcttgagcttgttctggatggaagggggcaggaaccaagg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)