BAC Information

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BAC

Clone NameMSMg01-530M09
Chromosome7 (Build37)
Map Location 34,892,658 - 34,893,331
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668419, EG668422, EG546954, LOC100043856, LOC100043857, EG545947, EG434676, EG668431, Abpd, EG545948, LOC435963, LOC435962, EG626970, LOC100043859, LOC627004, LOC100043398, LOC100043401, Scgb2b1, LOC668440, Abpz, LOC100043860, LOC627079, LOC635803, Abpg, LOC100043864, LOC100043865, Abpb, Abpa, LOC100043866, LOC100043867, LOC100043868
Downstream geneWtip, Sae2, LOC100043410, Pdcd2l, Gpi1, 4931406P16Rik, EG619734, Lsm14a, LOC668460, LOC668464, Kctd15, Chst8, Pepd, Cebpg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-530M09.T7 (MSMg01no530_m09.b1)MSMg01-530M09.TJ (MSMg01no530_m09.g1)
ACCAG599332AG599333
length761768
length of high quality
(start - end)
589 (73 - 661)672 (75 - 746)
definitionCHROMAT_FILE: MSMg01no530_m09.b1 PHD_FILE: MSMg01no530_m09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:12 2005CHROMAT_FILE: MSMg01no530_m09.g1 PHD_FILE: MSMg01no530_m09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:12 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGG
AATTCTGCAGGATGTTCTGGCTGCACCACAATTGATAGGTTGCACTTCAA
AGTCCCACTGGTTGTCCCTGCAGTATCCTTTAACCCAATCAGCCCCAACC
TCGAATCCCAAAATCCAGGCTTCCCTGAGAATTTCAAGGCTTTTATTGTT
GGATTCCTGTTCTTAGACACCTGGGCGGAAGGGATAGGGCTTGTTGCATC
TATGCTGGTGAGCAGCTAAGTGGCTTCCTTGAGAGCAAGGATGTACCCAT
CAACATGACCGGCTGCCTGTTACTTTATTCTGCAAAGAGAAAGCCAAGCA
AGGCTTCAGAGGTAAAGAAAACTTCATGCCCCACTGACCACATATGGGAA
CACCTCCTGGGAGGAACTGCATCCTCTTTGCAATAGCTTTTGAGTTCTAT
CAGGGCTAAGGAGCCTTGTCTCCCATCTGTTGAGACAATATCTGTAAAGA
GCCTCCAATCCAGGCAGATGAGAGAAGCGACCTCGTGGGACATCATAGGT
AAAAGTGGGACAGAGTGGGGAGGAGCTGACAGGGCTCCATGTGAGCCTGT
GGGCAGCTGGGACCCCATAAGGAAACTGACTCCCGTCACATGATGATGAC
CTTCATATGTCTGCAGCTGACACAATGACTTATCCCACTAGTTCTAGGGA
TAAGAGTGGGTTCAATTTAATTCTACCCTTGAATGTCTCATGCCTGAAGT
CCACACAGTGG
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACCAGGACTTGTGTGCAAGAACTTGC
TCAGATTTTGGTGAAGAATTGCAAACAATGCCTAAATGTTAACTCTGATC
TGTGTGCAGACACCAATCCTTGTCCAGGCTGAATACTTCTGAGCCACTGG
TGGCACAGTCATGGTTCTGTAACTCCCAAACAAACATGAAGTTAAAGGCT
CAAGAACTCTCCACCCTCCTTCCTCAGTATGTTCTGCCACTCTGGAGTCA
CTCAAGGACTCCAGAATTTCTCATTCCCCTCTCCTACTGACCACTGGACT
ATGCCTGTGGTGATTTGAATATACTTGGCCCAGGGAGTGGCACTCTTAGG
AGGTGTGTCCTGTTGGAGGAAGTGTGTCACTGTGGGGCTGGGCTTTGAGA
CCCTCCTTCTAGTTATCTGCAAGTCAGTCCTGTCCCAGCTGCCCTCAGAT
CAAGATGTAGAACTCTCAGCTTTTTCCCTAGAACATGTCTGCCTGCACTG
TGCCAAACTTTCAACTATAATAATGGACTGAACCTCTGAACCTGTAAGCC
AGCCCCAGTTTAATACTTTCCTTTATAGAAGTTACCTCTGTCTTGGTGTC
TATTCATGGCAATAAAACCCAAACTAAGGAAGAAGTAGCTACTGGGAGTA
GTGTATTGTTATGATAGGGCTGACCGTGATTTTGTTTGGAGGAATGTGGA
TTTTGGGACTTTGGATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no530_m09.g1 MSMg01no530_m09.g1 CHROMAT_FILE:
MSMg01no530_m09.g1 PHD_FILE: MSMg01no530_m09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:12 2005
         (672 letters)



>mm_chr7_34892457_34893529
          Length = 1073

 Score =  855 bits (442), Expect = 0.0
 Identities = 616/674 (91%), Gaps = 3/674 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   ccaggacttgtgtgcaagaacttgctcagattttggtgaagaattgcaaacaatgcctaa 61
           ||||||||||  ||||||||||||||||||||||||||||||| || ||||||| | |||
Sbjct: 202 ccaggacttgcatgcaagaacttgctcagattttggtgaagaaatggaaacaattcgtaa 261

                                                                       
Query: 62  atgttaactctgatctgtgtgcagacaccaatccttg-tccaggctgaatacttctgagc 120
           ||||||||||||||||||||||||||||||||||||| ||||||| || | | |||||||
Sbjct: 262 atgttaactctgatctgtgtgcagacaccaatccttgctccaggccgactgcctctgagc 321

                                                                       
Query: 121 cactggtggcacagtcatggttctgtaactcccaaacaaacatgaagttaaaggctcaag 180
           ||||| ||||||||||| |||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 322 cactgctggcacagtcacggttctctaactcccacacaaacatgaagttaaaggctcaag 381

                                                                       
Query: 181 aactctccaccctccttcctcagtatgttctgccactctggagtcactcaaggactccag 240
           ||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct: 382 aactctcaaccctccttcctcagtatgtcctgccactctggagtcagtcaagaactccag 441

                                                                       
Query: 241 aatttctcattcccctctcctactgaccactggactatgcctgtggtgatttgaatatac 300
             |||||||||||||||||| ||| ||||| ||||||| ||| ||||| || |||||| |
Sbjct: 442 gttttctcattcccctctcccactcaccacaggactatacctttggtggttagaatatgc 501

                                                                       
Query: 301 ttggcccagggagtggcactcttaggaggtgtgtcct-gttggaggaagtgtgtcactgt 359
           ||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||| 
Sbjct: 502 ttggcccagggagtgtcactcttaggaggtgtggccttgttggaggaagtgtgtcactga 561

                                                                       
Query: 360 ggggctgggctttgagaccctccttctagttatctgcaagtcagtcctgtcccagctgcc 419
           |||| ||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||
Sbjct: 562 ggggttgggctttgagaccctccttctagttacctgtaagtcagtcctgtcccagatgcc 621

                                                                       
Query: 420 ctcagatcaagatgtagaactctcagctttttccctagaacatgtctgcctgcactgtgc 479
           |||||||||| ||||||||||||||||| |||||| |||||||||||||||||| |||||
Sbjct: 622 ctcagatcaaaatgtagaactctcagctctttccccagaacatgtctgcctgcagtgtgc 681

                                                                       
Query: 480 caaactttcaactataataatggactgaacctctgaacctgtaagccagccccagtttaa 539
           || |||| | |||||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct: 682 catacttcccactataataatggactgaacctctgagcctgttagccagccccagttaaa 741

                                                                       
Query: 540 tacttt-cctttatagaagttacctctgtcttggtgtctattcatggcaataaaacccaa 598
           |||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 742 tacttttcctttatagaagttgcctctgtcttggtgtctgttcatggcaataaaacccaa 801

                                                                       
Query: 599 actaaggaagaagtagctactgggagtagtgtattgttatgatagggctgaccgtgattt 658
           ||||||| |||||||| ||| ||||| ||||||||||| ||||||| |||||| || |||
Sbjct: 802 actaaggcagaagtaggtaccgggagaagtgtattgttgtgataggcctgaccatggttt 861

                         
Query: 659 tgtttggaggaatg 672
           ||||||||||||||
Sbjct: 862 tgtttggaggaatg 875


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1073
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1063
Effective search space:   703706
Effective search space used:   703706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)