Query= MSMg01no531_b18.b1 MSMg01no531_b18.b1 CHROMAT_FILE:
MSMg01no531_b18.b1 PHD_FILE: MSMg01no531_b18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:39 2005
(684 letters)
>mm_chr7_99227599_99228681
Length = 1083
Score = 1239 bits (641), Expect = 0.0
Identities = 671/681 (98%), Gaps = 1/681 (0%)
Strand = Plus / Minus
Query: 4 ggaattcctattcactactgggcactgtgaatataaatattaaatagcctgaggttggaa 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 ggaattcctattcactattgggcactgtgaatataaatattaaatagcctgaggttggaa 824
Query: 64 ggctaattggagaaaacaaggaacaagaatactgctatgacagagacttgagagccataa 123
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 ggctaattggagaaaacaatgaacaagaatactgctatgacagagacttgagagccataa 764
Query: 124 cctaatacagataagagtgaagagtgagtaattagaaaagagtatatccttgtattatca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 cctaatacagataagagtgaagagtgagtaattagaaaagagtatatccttgtattatca 704
Query: 184 tgactcctggaaacacactacactcatgtacacagttctttttttcttaacatgatgaaa 243
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 703 tgactcctggaaacacactacactcatatacacagttc-ttttttcttaacatgatgaaa 645
Query: 244 atacctcttaattataaaaccccggatgttgagcatttcagaaaaggccagtttgttctg 303
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 644 atacctcttaattataaaaccccggatgttgagcaattcagaaaaggccagtttgttctg 585
Query: 304 ctctaagctatatcaggtcacctgctaggtgaagtcttgggggtactctaaggcagctgg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ctctaagctatatcaggtcacctgctaggtgaagtcttgggggtactctaaggcagctgg 525
Query: 364 aagttttggggagaagagtgccatgcgatttttctttcaattcttcatggcttaagtgag 423
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 524 aagttttggggagaagagtgccatgtgatttttcttttaattcttcatggcttaagtgag 465
Query: 424 ttcaggattcaaagtaaaaaaaagatcacttaaacctgaaggacttatgatgagggagga 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ttcaggattcaaagtaaaaaaaagatcacttaaacctgaaggacttatgatgagggagga 405
Query: 484 taagaatgttatccaccgtattttaaaaatatgtgtctgcccaagccttcagtctaccat 543
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 404 taagaatgttatccaccgtattttaaaaatatgtgtctgaccaagccttcagtctaccat 345
Query: 544 ctggattttgtatacttctaagaacaacatccaaaagtctcatcacatgacctttaccca 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ctggattttgtatacttctaagaacaacatccaaaagtctcatcacatgacctttaccca 285
Query: 604 cttcaggatagcctaacttcaccattttcctcttcttttaatgaacaaagttgcacacta 663
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 284 cttcaggatagcctaacttcaccattttcctcttctcttaataaacaaagttgcacacta 225
Query: 664 cagcccctcatactggactgt 684
|||||||||||||||||||||
Sbjct: 224 cagcccctcatactggactgt 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1083
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1073
Effective search space: 723202
Effective search space used: 723202
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no531_b18.g1 MSMg01no531_b18.g1 CHROMAT_FILE:
MSMg01no531_b18.g1 PHD_FILE: MSMg01no531_b18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:39 2005
(579 letters)
>mm_chr7_99082440_99083415
Length = 976
Score = 1042 bits (539), Expect = 0.0
Identities = 568/579 (98%), Gaps = 3/579 (0%)
Strand = Plus / Plus
Query: 1 ttcctgtatattttggtgtctatatttcctgattttctcaggattaaggcataaatctat 60
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 ttcctgtatattttggtgtctatatttcctgattttcttgggattaaggcataaatctat 260
Query: 61 ccagactaaacccaccttaatttgtctccatggtgaaactggttctaaacaaccacactg 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccagactaaactcaccttaatttgtctccatggtgaaactggttctaaacaaccacactg 320
Query: 121 gcaggtgtcgggggcttttgacagagtggttcataccatgatgatgccatggacataaac 180
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaggcatcgggggcttttgacagagtggttcataccatgatgatgccatggacataaac 380
Query: 181 tgtgccgtatgaaatgaggagaatgagactggggagaaatttagtctggtcaatgaggtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgccgtatgaaatgaggagaatgagactggggagaaatttagtctggtcaatgaggtt 440
Query: 241 agggactatatgtcaatcactgttcacaagcatctgctcttacaagaaagcctgttaaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agggactatatgtcaatcactgttcacaagcatctgctcttacaagaaagcctgttaaga 500
Query: 301 gttcaagaaaatatctttttagatagggaagaatagccaatcccagatgaggagataaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttcaagaaaatatctttttagatagggaagaatagccaatcccagatgaggagataaag 560
Query: 361 gaagaccaggcaatctcctacgaggacagatacaggtttagaaaacagggtgcacatgct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaagaccaggcaatctcctacgaggacagatacaggtttagaaaacagggtgcacatgct 620
Query: 421 cctttgagtcagagaaaacagcagatgtgaaagagatatgtcaaaagtttctgtgaatct 480
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 621 cctttgagtcagagaaaacagcagacgtgaaagagatatgtcaaaagtttctgtgaatct 680
Query: 481 cacgaaataagtactgtgggggcgggggggggggtgcagacttcagctgtaagaccctgt 540
||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||
Sbjct: 681 cacgaaataagtactgtgggggcggggcggggg---cagtcttcagctgtaagaccctgt 737
Query: 541 aaggcattctgagctctgcagagagttttcaaagggcca 579
|||||||||||||||||||||||||||||||||||||||
Sbjct: 738 aaggcattctgagctctgcagagagttttcaaagggcca 776
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 976
Length adjustment: 10
Effective length of query: 569
Effective length of database: 966
Effective search space: 549654
Effective search space used: 549654
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
