Query= MSMg01no531_d04.b1 MSMg01no531_d04.b1 CHROMAT_FILE:
MSMg01no531_d04.b1 PHD_FILE: MSMg01no531_d04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:45 2005
(707 letters)
>mm_chr7_64607893_64609001
Length = 1109
Score = 1234 bits (638), Expect = 0.0
Identities = 680/696 (97%), Gaps = 7/696 (1%)
Strand = Plus / Plus
Query: 17 gaattcattaccatt---ccatatgttaaaagagaatgtataggaaatcctttgggcaga 73
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 217 gaattcattacca--aagccatatgttaaaatagaatgtataggaaatcctttgggcaga 274
Query: 74 gaaaaattacagacgacagaaatactgatctagagaggccccc-aaacaacacaaatgct 132
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 275 gaaaaattacagacgacagaaatactgatctagagaggccccccaaacaacacaaatgct 334
Query: 133 tgcaatttcctggagttactaaacatcactaataataaaacactactgctgcaaacacca 192
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 335 tgcaatttcctggagttactaaacatcactagtaataagacactactgctgcaaacacca 394
Query: 193 catgttgtggaaaaaa-gatatagaaaaatgacactggaatgggactagaagattcctcc 251
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 catgttgtggaaaaaaagatatagaaaaatgacactggaatgggactagaagattcctcc 454
Query: 252 aaatctgtttattttgtggtgccaactggtgttatgtaggatattatcaggtaaaggcac 311
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aaatctgtttatattgtggtgccaactggtgttatgtaggatattatcaggtaaaggcac 514
Query: 312 tagcagtcagattcagctgtgaactctaagaattataatgtaaatcagctagacagatgt 371
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 515 tagcagtcagattcagctgtgaactctaagaattataatataaatcagctagacagatgt 574
Query: 372 ccctattgatgcaagtgtgacataactaatggtgatggtttgtatatccttggaccaggg 431
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 575 ccctattgatgcaagtgtgacataactaattgtgatggtttgtatatccttggaccaggg 634
Query: 432 agtggcaccatctgaaggtgtggccttgttggaataggtgtgacctggttggaatgggtg 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 agtggcaccatctgaaggtgtggccttgttggaataggtgtgacctggttggaatgggtg 694
Query: 492 tgtcactgtgggtgtgggtataagatcctcaccctagttgcctggaagtcagtcttccac 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 tgtcactgtgggtgtgggtataagatcctcaccctagttgcctggaagtcagtcttccac 754
Query: 552 tagcagcctttggatgaagacatagaactctcagctcctccagcgccatgcctgcctgga 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 tagcagcctttggatgaagacatagaactctcagctcctccagcgccatgcctgcctgga 814
Query: 612 tgctgccatgctcccaccttgatgataatggactgaacctctgaacctgtaagccagccc 671
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 815 tgctgccatgctcccaccttgatgctaatggactgaacctctgaacctgtaagccagccc 874
Query: 672 caattaaatgttgttttatataggacttgccttggt 707
||||||| |||| |||||||||||||||||||||||
Sbjct: 875 caattaagtgttcttttatataggacttgccttggt 910
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 707
Length of database: 1109
Length adjustment: 10
Effective length of query: 697
Effective length of database: 1099
Effective search space: 766003
Effective search space used: 766003
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no531_d04.g1 MSMg01no531_d04.g1 CHROMAT_FILE:
MSMg01no531_d04.g1 PHD_FILE: MSMg01no531_d04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:45 2005
(578 letters)
>mm_chr7_64720860_64721837
Length = 978
Score = 1106 bits (572), Expect = 0.0
Identities = 576/578 (99%), Gaps = 2/578 (0%)
Strand = Plus / Minus
Query: 1 tttgttcagctctgagccccattttttaatggggttatttgattttctggagtccacctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 tttgttcagctctgagccccattttttaatggggttatttgattttctggagtccacctt 660
Query: 61 cttgagttctttatatatatatattggatattagtcccctatccaatttgggataggtaa 120
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 cttgagttctt--tatatatatattggatattagtcccctatccaatttgggataggtaa 602
Query: 121 aatttctttttcacagatattttctaacagcaataaaaagtgactaaaacagaaaaatag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aatttctttttcacagatattttctaacagcaataaaaagtgactaaaacagaaaaatag 542
Query: 181 tgaacttaatttttaaaaaataagtgggtatatttacccatatatttttaaattttatag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tgaacttaatttttaaaaaataagtgggtatatttacccatatatttttaaattttatag 482
Query: 241 ttattgttattttgataacattttcattgtgtataataacacatttcagtttgggattta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttattgttattttgataacattttcattgtgtataataacacatttcagtttgggattta 422
Query: 301 cacatatgtatacacattcactgagtaactacaggctgcctttattcttcccacatccaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cacatatgtatacacattcactgagtaactacaggctgcctttattcttcccacatccaa 362
Query: 361 gcttactcaactcaacttttgttaataattataaaagaaattcacctttcagagcagttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gcttactcaactcaacttttgttaataattataaaagaaattcacctttcagagcagttt 302
Query: 421 caggtttgcagaactgagagaaacatacagagaatttcccatgctgccatgacccattta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 caggtttgcagaactgagagaaacatacagagaatttcccatgctgccatgacccattta 242
Query: 481 tacacagccttccctgccccactactgcgacaataatgcttttgttgtatccccgggtcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tacacagccttccctgccccactactgcgacaataatgcttttgttgtatccccgggtcc 182
Query: 541 atggtttatagcatcgttcacactgtccaatctatgag 578
||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atggtttatagcatcgttcacactgtccaatctatgag 144
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space: 549824
Effective search space used: 549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
