BAC Information

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BAC

Clone NameMSMg01-531G21
Chromosome7 (Build37)
Map Location 52,675,701 - 52,850,750
singlet/doubletdoublet
Overlap geneLOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2
Upstream geneLrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5
Downstream geneFgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog, Myod1, Kcnc1, Sergef
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531G21.T7 (MSMg01no531_g21.b1)MSMg01-531G21.TJ (MSMg01no531_g21.g1)
ACCAG599833AG599834
length752756
length of high quality
(start - end)		556 (75 - 630)572 (77 - 648)
definitionCHROMAT_FILE: MSMg01no531_g21.b1 PHD_FILE: MSMg01no531_g21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:03 2005CHROMAT_FILE: MSMg01no531_g21.g1 PHD_FILE: MSMg01no531_g21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,850,293 - 52,850,750)(52,675,701 - 52,676,272)
sequence
CCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACTCTGTATTACCGGATGGCCTCAAACTCACAGATTCGCCTAC
CTCCGCCTCCCGACAGTTAGGATTATAGGTGTGTCCCACTACACCCCAGG
GGCTTGAATATGGTTGCCTCAGGGAGTGGTACTATTAGGACATGTGGCCT
TGTTGGAGGAAATGTGAGACCCTTCTCCTTGCTGCCTGAAAGCCAGTTTT
TTCCTGTTTGCATTCAAACAAGATGCAGAAATCTTAGCTCCTATAGCAGT
GTCTGCCTGGAAGCTGCCATGGTGATAATGAACTGAATCTCTGAACCTAT
AAGCCCAGCCCCAATTAAATGTTGACTTTTATAAGGATTGCCTTGGTCAT
GGTATCTCTTCCCAACAATGGAAACCCTAAGAAGCCCAGTTAATACAACT
TTTATTAATTATTATATCTGTTGGTAGACATTTGAGTTATTTATGCATTT
TATCTATTAACTGCTGTGTATTTTAACATACAATTTTTGGTCTGTTTTTA
ATTCTCTGTGGCGTATATTTGAGTGTGGGTGTATGCCTGTGCATGTATGT
GTATGTGCGTGCGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGAGAGAGAGAGAGATATATAGAGAGAGATAGAGCTCTTCCCTTGTC
TGGGATCAAATTTTCATCCTCACTTGTTACCTATTGACTGCACTTTCTGA
TA

ACATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCGCTATGGGAGTGCCAGGGCGGA
GCTGCTGTGAGCCGGTGAAGCCCACCCACCACGCAAACTCCATCATTGGA
CTTGTGGGCGGGCCAACCCGGACACACCCCTTACTTCCAGAGTTCCTCCA
GGCGGAATTTACTGATTAAGAAGTTTTATAGCTGAAACCACACCTATTTT
TGGACCCAATCCAGGCATCCTGATTAGGGGCTGGGAGACGGTGGTGCACC
ACCTCTGGTTGGATTGAAAGCAAATTTGGAGGCCCACTCGTCAGAACCTA
AGGTTGAAGCTGTGCCCTCCTATTTAGTTGTACCCAACCATCAGAGTGGG
TCTGATGGACGTTTACTCCAGCAATCTGGGGGTTCAGCGAGCAGCCTGCA
GTGGCCTCCCCTTTACCTTGTTTCCCGTGCTTCCAATGTCAGCTAAGCCC
TGACACCTGGGCCGAGTGTGAGGCCAATTCACTGGGACACTGGAGCTAGT
CCCTGGCTTCCCTGACCTTGTCTGTGTCTCGCCCCCAAAGAGATTAGTGT
CTAGGTTACCCAAGCCTGTAGCCACTACTTAGTGGCCTTGCCACCCCCAC
AACCCGCAGGTATAAAGCCAGGTGCCCAACGCAGGGAAGGTATCAAGAAT
GGAGAGGCTCCAGGTTATATGGAAGGGCCCAGGGTACTTCCCAATCCCAC
CAAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_g21.b1 MSMg01no531_g21.b1 CHROMAT_FILE:
MSMg01no531_g21.b1 PHD_FILE: MSMg01no531_g21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:03 2005
         (556 letters)



>mm_chr7_52849795_52850750
          Length = 956

 Score =  847 bits (438), Expect = 0.0
 Identities = 453/458 (98%)
 Strand = Plus / Minus

                                                                       
Query: 99  ggagtggtactattaggacatgtggccttgttggaggaaatgtgagacccttctccttgc 158
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956 ggagtggtactattaggacatgtggccttgttggaggaaatgtgagacccttctccttgc 897

                                                                       
Query: 159 tgcctgaaagccagttttttcctgtttgcattcaaacaagatgcagaaatcttagctcct 218
           |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 896 tgcctggaagccagttttttcctgtttgcgttcaaacaagatgcagaaatcttagctcct 837

                                                                       
Query: 219 atagcagtgtctgcctggaagctgccatggtgataatgaactgaatctctgaacctataa 278
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 atagcagtgtctgcctggaagctgccatggtgataatgaactgaatctctgaacctataa 777

                                                                       
Query: 279 gcccagccccaattaaatgttgacttttataaggattgccttggtcatggtatctcttcc 338
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 gcccagccccaattaaatgttgacttttataaggattgccttggtcatggtatctcttcc 717

                                                                       
Query: 339 caacaatggaaaccctaagaagcccagttaatacaacttttattaattattatatctgtt 398
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 caacaatggaaaccctaagaagcccagttaatacaacttttattaattattatatctgtt 657

                                                                       
Query: 399 ggtagacatttgagttatttatgcattttatctattaactgctgtgtattttaacataca 458
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ggtagacatttgagttatttatgcattttatctattaactgctgtgtattttaacataca 597

                                                                       
Query: 459 atttttggtctgtttttaattctctgtggcgtatatttgagtgtgggtgtatgcctgtgc 518
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 596 atttttggtctgtttttaattctctgtggtgtatatttgagtgtgggtgtatgcctgtgc 537

                                                 
Query: 519 atgtatgtgtatgtgcgtgcgtgcgtgcgtgtgtgtgt 556
           ||||||||||||||||||||||| ||| ||||||||||
Sbjct: 536 atgtatgtgtatgtgcgtgcgtgtgtgtgtgtgtgtgt 499


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no531_g21.g1 MSMg01no531_g21.g1 CHROMAT_FILE:
MSMg01no531_g21.g1 PHD_FILE: MSMg01no531_g21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:03 2005
         (572 letters)



>mm_chr7_52675501_52676472
          Length = 972

 Score = 1091 bits (564), Expect = 0.0
 Identities = 570/572 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccgctatgggagtgccagggcggagctgctgtgagccggtgaagcccacccaccacgcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccgctatgggagtgccagggcggagctgctgtgagccggtgaagcccacccaccacgcaa 260

                                                                       
Query: 61  actccatcattggacttgtgggcgggccaacccggacacaccccttacttccagagttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actccatcattggacttgtgggcgggccaacccggacacaccccttacttccagagttcc 320

                                                                       
Query: 121 tccaggcggaatttactgattaagaagttttatagctgaaaccacacctatttttggacc 180
           |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccaggcgcaatttactgatcaagaagttttatagctgaaaccacacctatttttggacc 380

                                                                       
Query: 181 caatccaggcatcctgattaggggctgggagacggtggtgcaccacctctggttggattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caatccaggcatcctgattaggggctgggagacggtggtgcaccacctctggttggattg 440

                                                                       
Query: 241 aaagcaaatttggaggcccactcgtcagaacctaaggttgaagctgtgccctcctattta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagcaaatttggaggcccactcgtcagaacctaaggttgaagctgtgccctcctattta 500

                                                                       
Query: 301 gttgtacccaaccatcagagtgggtctgatggacgtttactccagcaatctgggggttca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttgtacccaaccatcagagtgggtctgatggacgtttactccagcaatctgggggttca 560

                                                                       
Query: 361 gcgagcagcctgcagtggcctcccctttaccttgtttcccgtgcttccaatgtcagctaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcgagcagcctgcagtggcctcccctttaccttgtttcccgtgcttccaatgtcagctaa 620

                                                                       
Query: 421 gccctgacacctgggccgagtgtgaggccaattcactgggacactggagctagtccctgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gccctgacacctgggccgagtgtgaggccaattcactgggacactggagctagtccctgg 680

                                                                       
Query: 481 cttccctgaccttgtctgtgtctcgcccccaaagagattagtgtctaggttacccaagcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttccctgaccttgtctgtgtctcgcccccaaagagattagtgtctaggttacccaagcc 740

                                           
Query: 541 tgtagccactacttagtggccttgccaccccc 572
           ||||||||||||||||||||||||||||||||
Sbjct: 741 tgtagccactacttagtggccttgccaccccc 772


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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