Query= MSMg01no531_i02.b1 MSMg01no531_i02.b1 CHROMAT_FILE:
MSMg01no531_i02.b1 PHD_FILE: MSMg01no531_i02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:09 2005
(680 letters)
>mm_chr7_84147240_84148319
Length = 1080
Score = 839 bits (434), Expect = 0.0
Identities = 473/494 (95%), Gaps = 13/494 (2%)
Strand = Plus / Minus
Query: 4 ggaattcccacgattacttcacagatgatgagactagagtaaatgagcaaccttcctaac 63
||||||||| ||| |||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 481 ggaattcccgcgagcacttcacagatgatgagactagagtaaatgagcaacatccctaac 422
Query: 64 agtggacagccaagcaattgttgtaatgtgaattcggggtactgataccacagcccaggt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 agtggacagccaagcaattgttgtaatgtgaattcggggtactgataccacagcccaggt 362
Query: 124 tctcaaccacactgctcggctgctcagtgacatcacaatgaattcactcagtcattaaga 183
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tctctaccacactgctcggctgctcagtgacatcacaatgaattcactcagtcattaaga 302
Query: 184 tagacagagggaagagacaatggcagatattttgctttttatggatcatacaatccccaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tagacagagggaagagacaatggcagatattttgctttttatggatcatacaatccccaa 242
Query: 244 ttcaaccacagaactctatttttaagagtgcaaaatccagccaggtgtgatggtgcatgc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 241 ttcaaccacagaactctatttttaagagtgcaaaatccagccaggtgtgatggtgcacgc 182
Query: 304 ctttaatcccagcactcgggaggcagaggcaggctgatttccaagttcaaggccagcctg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctttaatcccagcactcgggaggcagaggcaggctgatttccaagttcaaggccagcctg 122
Query: 364 gttgacaaagtgagttccaggacagccagaactatacagagaaaccttgtctcgaaaaac 423
||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 121 gttgacaaagtgagttccaggacag-------------gagaaaccttgtctcgaaaaac 75
Query: 424 caaaataaataaataaatgaaaataaaaataaagagtgcaaaatccagtttgaatagcgt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 74 caaaataaataaataaatgaaaataaaaataaagagtgcaaaatccagtttgaatagtgt 15
Query: 484 gtgaataagtgaat 497
||||||||||||||
Sbjct: 14 gtgaataagtgaat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space: 716900
Effective search space used: 716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no531_i02.g1 MSMg01no531_i02.g1 CHROMAT_FILE:
MSMg01no531_i02.g1 PHD_FILE: MSMg01no531_i02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:09 2005
(645 letters)
>mm_chr7_84007575_84008619
Length = 1045
Score = 1214 bits (628), Expect = 0.0
Identities = 640/644 (99%)
Strand = Plus / Plus
Query: 1 tccagctgcattttcaggtggtcaactttatatgggagctgcaatagtctgtgctatatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccagctgcattttcaggtggtcaactttatatgggagctgcaatagtctgtgctatatg 260
Query: 61 gttagaacacacaagtatgtatgacttgtttgataaaattaaaagaaaaacatatcctaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttagaacacacaagtatgtatgacttgtttgataaaattaaaagaaaaacatatcctaa 320
Query: 121 agtggaaggcagagtatattactattagaatgttaatatcttcacatgaaatattttgcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtggaaggcagagtatattactattagaatgttaatatcttcacatgaaatattttgcc 380
Query: 181 tttggacaacaggttttggcaaataataaaacaattaagattgtattctgagccatgaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttggacaacaggttttggcaaataataaaacaattaagattgtattctgagccatgaac 440
Query: 241 ctgaatattctatgactcaaatgtataatatagaagaataaaaggaaggagatgaagaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgaatattctatgactcaaatgtataatatagaagaataaaaggaaggagatgaagaga 500
Query: 301 aaagtactggagaatcagtcacagagttcaatacacagggatatttgttaacttcagaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaagtactggagaatcagtcacagagttcaatacacagggatatttgttaacttcagaaa 560
Query: 361 attgacttcaagaaatacccaaatcaagtttcttataaagtgactaaggtacttttgtat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attgacttcaagaaatacccaaatcaagtttcttataaagtgactaaggtacttttgtat 620
Query: 421 actatgcacattacttcataaattcttgaaatctttcttttgtgtggatgtgttccctac 480
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actatgcacatcacttcataaattcttgaaatctttcttttgtgtggatgtgttccctac 680
Query: 481 atgtctatatgtgcactatatgtgcacacatttttcatacaccagaagcatgggcatgct 540
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgtccatatgtgcactatatgtgcacacatttttcatacaccagaagcatgggcatgct 740
Query: 541 taatctggcataggcctgtagaggatactagcttccctggaattggaattatgtataact 600
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 741 taatctggcataggcctgtagaggatactagctttcctggaattggaattatgtataact 800
Query: 601 gtgagctaccatgtaagtactgggaactgaatctgggttttctg 644
||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 801 gtgagctaccatgtaagtactgggaactgaatctgggttctctg 844
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space: 657225
Effective search space used: 657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
