Query= MSMg01no532_f14.b1 MSMg01no532_f14.b1 CHROMAT_FILE:
MSMg01no532_f14.b1 PHD_FILE: MSMg01no532_f14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:15 2005
(617 letters)
>mm_chr7_73090157_73091173
Length = 1017
Score = 1131 bits (585), Expect = 0.0
Identities = 606/617 (98%), Gaps = 8/617 (1%)
Strand = Plus / Plus
Query: 5 gaattctgcctcattagcgcctccgttaagcagttgacgcttgtgagcattttaaggcag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgcctcattagcgcctccgttaagcagttgacgcttgtgagcattttaaggcag 264
Query: 65 ctgtttaagctccaagttaatcgtcaaagcagaaggatttacaatgcacaggaggcctgg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgtttaagctccaagttaatcgtcaaagcagaaggatttacaatgcacaggaggcctgg 324
Query: 125 gagatttgatgactgtgagaggcagtgctgtcaaggaagaggggtccccacttccctatc 184
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gagatttggtgactgtgagaggcagtgctgtcaaggaagaggggtccccacttccctatc 384
Query: 185 cctcaccccccacatcatgtctaaagtgcttgcctgctgggtctggaagttcctaggaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctcaccccccacatcatgtctaaagtgcttgcctgctgggtctggaagttcctaggaaa 444
Query: 245 gtcctgagctcctgggaagggggagttcgacaccctggtgaccacaccctctccaggagg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtcctgagctcctgggaagggggagttcgacaccctggtgaccacaccctctccaggagg 504
Query: 305 ataaggtgagcctggctcctgatatcttgggccgcccaggtcagagttctagagataatc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ataaggtgagcctggctcctgatatcttgggccgcccaggtcagagttctagagataatc 564
Query: 365 ccccaaacactgaggaggcccttccttcctgatggccctgagaaggatggactaaaacag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccccaaacactgaggaggcccttccttcctgatggccctgagaaggatggactaaaacag 624
Query: 425 tctagcagttcctcaggcttatg----gccggttccagggcaatctccctcccttcatgg 480
|| |||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 625 tcgagcagttcctcaggcttatgaacagc----tccagggcaatctccctcccttcatgg 680
Query: 481 ctgctcaatgtcttacattcactacccgcttgccttcttcagaggccagctccgggcatg 540
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgttcaatgtcttacattcactacccgcttgccttcttcagaggccagctccgggcatg 740
Query: 541 agttggctttctccttctcagctgcacaccctcttgggttgctgttcttgcctgtggtgt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agttggctttctccttctcagctgcacaccctcttgggttgctgttcttgcctgtggtgt 800
Query: 601 agatatgtgagtgtccc 617
|||||||||||||||||
Sbjct: 801 agatatgtgagtgtccc 817
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space: 611249
Effective search space used: 611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no532_f14.g1 MSMg01no532_f14.g1 CHROMAT_FILE:
MSMg01no532_f14.g1 PHD_FILE: MSMg01no532_f14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:15 2005
(621 letters)
>mm_chr7_73252960_73253980
Length = 1021
Score = 1154 bits (597), Expect = 0.0
Identities = 615/621 (99%)
Strand = Plus / Minus
Query: 1 ctaagtagctagggctgccctcgaactcagagaatctgagatctgtctctgcctctcgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 ctaagtagctagggctgccctcgaactcagagaatctgagatctgtctctgcctctcgag 857
Query: 61 cgctgggcttaaaggcgagcggcaccaagcccggcatattagtttttttaatggatattg 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 856 cgctgggcttaaaggcgagcggcaccaagcccggcatattagttttttaaatggatattg 797
Query: 121 aagagatgggtgggtgagttaccactagatgataaatacctgtatttagtcccagtgagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 aagagatgggtgggtgagttaccactagatgataaatacctgtatttagtcccagtgagc 737
Query: 181 agagagctggttagtatccccctcacctaagtctgtcagtatttttaagagtagatttat 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 agagagctggttagtacccccctcacctaagtctgtcagtatttttaagagtagatttat 677
Query: 241 aaaacggatatggattgtgtacgtggtgtgggggatgggttctcgggagccatacaccta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 aaaacggatatggattgtgtacgtggtgtgggggatgggttctcgggagccatacaccta 617
Query: 301 gttttttgaaacaggatctcttactattctggaggtctccaagtaagttaggctcgctga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gttttttgaaacaggatctcttactattctggaggtctccaagtaagttaggctcgctga 557
Query: 361 atggatttttaagttggataccagtttccctatatttgctctgtcttaacttttatacgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 atggatttttaagttggataccagtttccctatatttgctctgtcttaacttttatacgt 497
Query: 421 tttgttaaaaacgaaagcccttcaacttgggtgcccacacgacaaatgtttgtaaatacc 480
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 496 tttgttaaaaacgaaagcccttcaacttgggtgcccacatgacaaatgtttgtaaatacc 437
Query: 481 aattttatttcttagtcaccaatgtgttaggattataatcgcaaagtagccacttggacc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aattttatttcttagtcaccaatgtgttaggattataatcgcaaagtagccacttggacc 377
Query: 541 tgctctaatagagcccaggtgctagctgaagctgcagaacgctttgaactccacatcctc 600
|||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct: 376 tgctctaatagagcccaggtgctagctgaagctgcagatcgttttgaactccagatcctc 317
Query: 601 ttgcttatggaactggagtca 621
|||||||||||||||||||||
Sbjct: 316 ttgcttatggaactggagtca 296
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space: 617721
Effective search space used: 617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
