BAC Information

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BAC

Clone NameMSMg01-533I05
Chromosome7 (Build37)
Map Location 111,830,078 - 111,830,562
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr625-ps1, Olfr261-ps1, Olfr260-ps1, Olfr627, Olfr1526-ps1, Olfr629, Olfr630, Olfr69, Olfr68, Olfr67, Hbb-b1, EG436003, Hbb-bh1, Hbb-y, Olfr66, Olfr64, Olfr65, Olfr631, Olfr632, Olfr633, Olfr634-ps1, LOC233614, Olfr635, Olfr636-ps1, Olfr637-ps1, Olfr638, Olfr639, Olfr640, Olfr641, Olfr642, Olfr643, Olfr644, Olfr645, Olfr646, 4931431F19Rik, Ubqln3, Ubqlnl, E030002O03Rik, Olfr647-ps1, Olfr648, Olfr649, Olfr650-ps1, Trim6, LOC667497, EG667823, Trim12, Trim34, 9230105E10Rik, A530023O14Rik, EG434219, LOC100041595, Trim30, AI451617, LOC672495, LOC625305, EG625321, Olfr651, Olfr652, Olfr653, Olfr654, Olfr655, Olfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214
Downstream geneOlfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665, Olfr666, Olfr667, Olfr668, Olfr669, EG545987, Olfr670, Olfr671, Olfr672, GA_x5J8B7W6B6J-189947-189022, Olfr674-ps1, Olfr675, Olfr676, Olfr677, LOC667987, Olfr678, Olfr679, Olfr680-ps1, Olfr681, Olfr682-ps1, Olfr683, Olfr684, Olfr685, Olfr686, EG668035, Olfr688, Olfr689, Olfr690, Olfr691, Olfr692, EG545989, 4632419K20Rik, Cnga4, EG244189, Cckbr, Prkcdbp, Smpd1, Apbb1, Hpxn, Trim3, Arfip2, Fxc1, Dnhd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533I05.T7 (MSMg01no533_i05.b1)MSMg01-533I05.TJ (MSMg01no533_i05.g1)
ACCAG601417AG601418
length727746
length of high quality
(start - end)		247 (60 - 306)483 (76 - 558)
definitionCHROMAT_FILE: MSMg01no533_i05.b1 PHD_FILE: MSMg01no533_i05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:44 2005CHROMAT_FILE: MSMg01no533_i05.g1 PHD_FILE: MSMg01no533_i05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:44 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCCCCTTTTTTTCTTCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCTTATGAGATCATCATAAAGAATTGAGAAGTC
ATCTATCTGTCTATATGGCATCATTCCAAGAAGGTATATCTTCATAGTTC
TACAAAGATCTGATCAAAAGAGTGGGCTAATACCTAGTGATTGTTACATA
TGTTTAATAATAACAGGTAAACCATCTTAATGACAGGATTCTTTCCTAAA
GTGATTTTCTCCTGGTCCTTACCTAACAGAGTTCCATCTTAGATTTTAAT
ATAAGGGGGTCATCTCAGGAATATCACCTGTTAGTTATTATCTTGTCTTA
TGATGAATCCTGATAATATCTTATTAATAATATCAGTCTAAGGTATTGAT
CATTGCTCACATAGCATCTCACAAGACTTGTAAAGCCAACTGGTGTGTAT
TGTGAAACAAGTGCGAGATGAGTGTGATAGTTCCGGCGTCTGCGGCTAGT
TCTGTAGATTGCTTCCTTCTTGCATGACTCTTTTGCTGAGAATAAAGCCC
AGCCTTGTGGTCCTTCCTGCTGTGTACCTCTGATGATGGTCCCCGATTCA
ATTACAGTTTCTCCTTATGTCATATTACTTTCGTGTTGGCCACTCTTTTT
TATTCTCCATCCTTTTTCTTGTTTATTAAACATTCTTCCTCCCACCATAC
TTTCTTTTTATTTAGGCCATATTAATC

TCCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGCAGCTCAGTACCCTAGAAGTTTG
GTGAAATGCACTGTCGGGGAGTCATATCGGTGTCTCAGAGTTATGTCCTG
AAATTTGCCCAGCAGGTACTTGTAGGATGCAATGAAGAAGTTTGCATGCA
AACCTATAAGTATTGAGAAACAGAACTCTTTTTAGAGACAACTTTATCAG
AGGAAAAATAGAAACAAGGTCCAAAAGCCTTCTCAGCATTAATAAGGTCA
GGTAAGAGGTGTGGCTAGCATTGCTATCAGGTCTGCAGGGATTCACAGGC
CCTTGACCTTATCCCCAAAAGAACTTCCCATTGGTGGGACCAGCATTTTG
ACTTAACTTCAACCTTGCAAAGGTCCACTCAGGCATAGAAGCATATGTCC
TGGGAAAGAACAAGAGAGACTTCACGTAACAGTTATACAAGATTGCATGC
AGACTCTACACTACCCAGCTCCTGCCCCTTTGGATTTGTTTTGGCTGTCA
TGCCCAGTGTCAGTTCAGAAGGCCAGATCTCTCCTGCTCTGTTCTTGTCT
TCTTCTTACCCTCAGCTTCCTCCTTTTCTCTTTTTATCTTTATAGATTTC
ACATGGCCACAGTTGATGCTGGCTCATGGATTTCCTATGCTGCAACCTTT
TGACATGGATTTTAAGTTATTTGCCTGCATTTTCTTTGTCTATCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_i05.g1 MSMg01no533_i05.g1 CHROMAT_FILE:
MSMg01no533_i05.g1 PHD_FILE: MSMg01no533_i05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:44 2005
         (483 letters)



>mm_chr7_111829878_111830762
          Length = 885

 Score =  876 bits (453), Expect = 0.0
 Identities = 477/485 (98%), Gaps = 2/485 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcagctcagtaccctagaagtttggtgaaatgcactgtcggggagtcatatc-ggtgtc 59
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 agcagctcagtaccctagaagtttggtgaaatgcactgtcggggagtcatatcaggtgtc 260

                                                                       
Query: 60  tcagagttatgtcctgaaatttgcccagcaggt-acttgtaggatgcaatgaagaagttt 118
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 tcagagttatgtcctgaaatttgcccagcaggttacttgtaggatgcaatgaagaagttt 320

                                                                       
Query: 119 gcatgcaaacctataagtattgagaaacagaactctttttagagacaactttatcagagg 178
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcatgcaaacctctaagtattgagaaacagaactctttttagagacaactttatcagagg 380

                                                                       
Query: 179 aaaaatagaaacaaggtccaaaagccttctcagcattaataaggtcaggtaagaggtgtg 238
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 aaaaatagaaacaaggtccaaaagccttctcagcattaataaggtcaggaaagaggtgtg 440

                                                                       
Query: 239 gctagcattgctatcaggtctgcagggattcacaggcccttgaccttatccccaaaagaa 298
           ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctagcattgcaatcaggtctacagggattcacaggcccttgaccttatccccaaaagaa 500

                                                                       
Query: 299 cttcccattggtgggaccagcattttgacttaacttcaaccttgcaaaggtccactcagg 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttcccattggtgggaccagcattttgacttaacttcaaccttgcaaaggtccactcagg 560

                                                                       
Query: 359 catagaagcatatgtcctgggaaagaacaagagagacttcacgtaacagttatacaagat 418
           |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 561 catagaagcatatgtcctgggaaagaacaagagaaacttcacgtaacagttacacaagat 620

                                                                       
Query: 419 tgcatgcagactctacactacccagctcctgcccctttggatttgttttggctgtcatgc 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgcatgcagactctacactacccagctcctgcccctttggatttgttttggctgtcatgc 680

                
Query: 479 ccagt 483
           |||||
Sbjct: 681 ccagt 685


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 885
Length adjustment: 10
Effective length of query: 473
Effective length of database: 875
Effective search space:   413875
Effective search space used:   413875
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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