BAC Information

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BAC

Clone NameMSMg01-533J21
Chromosome7 (Build37)
Map Location 134,432,589 - 134,582,187
singlet/doubletdoublet
Overlap geneItgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688
Upstream geneSbk1, LOC100043495, Lat, 2210013K02Rik, Nfatc2ip, Cd19, Rabep2, Atp2a1, Sh2b1, Tufm, Atxn2l, Eif3s8, Cln3, Apob48r, Il27, Nupr1, Ccdc101, Sult1a1, LOC629029, Giyd2, Bola2, Coro1a, Snrp1c-ps1, LOC100043044, Mapk3, Gdpd3, Ypel3, Tbx6, Ppp4c, Aldoa, 1500016O10Rik, 4930451I11Rik, Doc2a, Ccdc95, Hirip3, 1110032O16Rik, Kctd13, A830007L07Rik, Sez6l2, D830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2
Downstream geneZfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533J21.T7 (MSMg01no533_j21.b1)MSMg01-533J21.TJ (MSMg01no533_j21.g1)
ACCAG601497AG601498
length719793
length of high quality
(start - end)		560 (50 - 609)282 (75 - 356)
definitionCHROMAT_FILE: MSMg01no533_j21.b1 PHD_FILE: MSMg01no533_j21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:52 2005CHROMAT_FILE: MSMg01no533_j21.g1 PHD_FILE: MSMg01no533_j21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,581,861 - 134,582,187)(134,432,589 - 134,432,866)
sequence
NCTTTATTTTTTTTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT
TCAGGATCCGCGGAATTCCAGGAGAAGTTCTTGGCTGTGCCTCTCACAGG
GAATCCTCTCTCAGGGAAGTGAAGTCACGCCATCTAGTTCTATTTATACC
CGCCAAACATCACGTGTCCTCCACGTGCCTTGCCTCAGCACGTGCATGCA
ATCAGCCTGAGTCCCTGGAGTCCTGACAAATGCAGCTCAACTATAAAACA
TAAGTTGGATCAATACATGTGTGTTGTTAGCAAAGAATCCTTCATTGCGT
GTCCTTTCGCATGTTCACTTTAGCAGAACATCCTCTCTCCTGTATCTGCT
TCAGTGAAACATTCCTTCACAAGTCTGTCTTAGTCTTCCACTTCAGGAAA
ACACTCTCCTTCATGTGTTTGCCCCAGCAAAACACCATCCAACACAACTG
ACTCACCAAAGAACCCTTAAGTTTCAACCTCACCCACCTTTTAATTTTTG
GTCATGCTTGGAATTAACCCAGTACCTTGTACAAGCCAGGCAGGCATTCT
ATACCTGAGACTCATCCTCAGCTCTGAATGAAGGGAGGCTATGACGACTA
TGTGACTTCAGCAAAAATAAGCTTTAGATCTTCCTAGCTTGCCAAGGGCG
CTTGCAGCCACCTACTANGGTGACTGGGCATTTGTTGGAGGGCAAATAAC
TAGACATTTCCAGGAATTT

CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCCTGACTCAAACACTCAAATGTTG
GAATTATAGTCGTGTGCCACCATGCCTAGCTGTCAGAAGTTTACGAAGCT
GAAGAAGGCCACACTCAGGTGTCTGAAGGTAATATAGCAGTCCCACTGAG
GGAGAAGAGCTGAATTATGACTACGAGTTCCAAGGAGGGTCAAAGAAAAG
TCTGAAGAGAAGGAATGAGGATGAGAGATAGTTCAAAGGACATGATAACT
GACCAGGAAGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTATGTNNATNNNNNTTTNNTTTNCTTTCTTTTTTTTTTTTTATNTTTTT
NNNNNTTTTTTTTTTTTTTNTTTTTTTTNTTTTTTTTTNTTTTTCCTTTT
TNNTCTTTTTTTTTTTNTTTTTTTTTTTTTTTTCTTTTTNTTTTTTTTTT
TTTTTTTTTTTTTNNNNNTTTTTCCTTTCCCTTTCCTCCCTTTTTTTCCT
TTTCCTCTCCTTTCCTTTTTCCTCTTNTCTTTCCTTCTTTTTCTTTCTCT
TTTTTCCCTCTTCTCTTCCTTTCCCCTTTCCTCTCCCTTTTTTTCTTTTT
ATTTCCTTTTCTTTTTCTCTTTTCTTTTTTCCTTTTTTTCTCTTCTTTTT
TTTTTTTTTTTCTCCTTCTTCCTCTTTTTCCCCTTTTCTTTTTTTTCTTT
TTCCCTCTCTCTTTTTTTTTTCTTCTCTCTTTCCCTCCCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_j21.b1 MSMg01no533_j21.b1 CHROMAT_FILE:
MSMg01no533_j21.b1 PHD_FILE: MSMg01no533_j21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:52 2005
         (560 letters)



>mm_chr7_134581228_134582187
          Length = 960

 Score =  594 bits (307), Expect = e-174
 Identities = 322/327 (98%)
 Strand = Plus / Minus

                                                                       
Query: 234 aagaatccttcattgcgtgtcctttcgcatgttcactttagcagaacatcctctctcctg 293
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 960 aagaatccttcattgcgtgtcctttcacatgttcactttagcagaacatcctctctcctg 901

                                                                       
Query: 294 tatctgcttcagtgaaacattccttcacaagtctgtcttagtcttccacttcaggaaaac 353
           |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 900 tatctgcttcagtgaaaccttccttcacaagtctgccttagtcttccacttcaggaaaac 841

                                                                       
Query: 354 actctccttcatgtgtttgccccagcaaaacaccatccaacacaactgactcaccaaaga 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 actctccttcatgtgtttgccccagcaaaacaccatccaacacaactgactcaccaaaga 781

                                                                       
Query: 414 acccttaagtttcaacctcacccaccttttaatttttggtcatgcttggaattaacccag 473
           |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 780 acccttaagtttcaacctcacccacctttttatttttggccatgcttggaattaacccag 721

                                                                       
Query: 474 taccttgtacaagccaggcaggcattctatacctgagactcatcctcagctctgaatgaa 533
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 taccttgtacaagccaggcaggcattctatacctgagactcatcctcagctctgaatgaa 661

                                      
Query: 534 gggaggctatgacgactatgtgacttc 560
           |||||||||||||||||||||||||||
Sbjct: 660 gggaggctatgacgactatgtgacttc 634


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no533_j21.g1 MSMg01no533_j21.g1 CHROMAT_FILE:
MSMg01no533_j21.g1 PHD_FILE: MSMg01no533_j21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:52 2005
         (282 letters)



>mm_chr7_134432389_134433070
          Length = 682

 Score =  522 bits (270), Expect = e-153
 Identities = 276/278 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcctgactcaaacactcaaatgttggaattatagtcgtgtgccaccatgcctagctgtc 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 ttcctgactcaaacactcaaatgttggaattacagtcgtgtgccaccatgcctagctgtc 260

                                                                       
Query: 61  agaagtttacgaagctgaagaaggccacactcaggtgtctgaaggtaatatagcagtccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaagtttacgaagctgaagaaggccacactcaggtgtctgaaggtaatatagcagtccc 320

                                                                       
Query: 121 actgagggagaagagctgaattatgactacgagttccaaggagggtcaaagaaaagtctg 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 actgagggagaagagctgaattatgactacgagttccagggagggtcaaagaaaagtctg 380

                                                                       
Query: 181 aagagaaggaatgaggatgagagatagttcaaaggacatgataactgaccaggaaggggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagagaaggaatgaggatgagagatagttcaaaggacatgataactgaccaggaaggggt 440

                                                 
Query: 241 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 278
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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