BAC Information

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BAC

Clone NameMSMg01-533O14
Chromosome7 (Build37)
Map Location 114,180,318 - 114,180,733
singlet/doubletsinglet
Overlap geneOlfr713
Upstream geneLOC100042047, EG668108, EG668117, Gvin1, LOC672660, LOC100042097, LOC668128, LOC634394, EG209380, EG668139, Gm1966, LOC100042141, Olfr693, Olfr694, Olfr695, Olfr696-ps1, Olfr697, Olfr698, Olfr699, Olfr700, Olfr701, Olfr702, Olfr703, Olfr704, Olfr705, Olfr706, Olfr707, Olfr708, Olfr709-ps1, Olfr710, LOC384651, Olfr6, Olfr711, GA_x5J8B7W6B6J-1784824-1783474, Olfr2
Downstream geneOlfr714, Olfr17, Olfr715, Olfr716, Nlrp14, LOC100042278, 1700012H05Rik, Syt9, Olfml1, Ppfibp2, 5330417H12Rik, Cyb5r2, Ovch2, LOC100042310, Olfr467, Olfr468-ps1, Olfr469, GA_x5J8B7W6B6J-2580381-2580079, Olfr470, Olfr471, LOC626661, Olfr472, Olfr473, LOC669301, Olfr474, Olfr476, Olfr477, LOC626732, Olfr478
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533O14.T7 (MSMg01no533_o14.b1)MSMg01-533O14.TJ (MSMg01no533_o14.g1)
ACCAG601722AG601723
length724720
length of high quality
(start - end)
416 (210 - 625)497 (160 - 656)
definitionCHROMAT_FILE: MSMg01no533_o14.b1 PHD_FILE: MSMg01no533_o14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:14 2005CHROMAT_FILE: MSMg01no533_o14.g1 PHD_FILE: MSMg01no533_o14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:14 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CGGTTTTGTGTTCGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCCATACAGTGCATAATCTATGTCACTTTCATGCTGA
TTAGCAAAATAATACCTTGAACAAATTAATCATAGAAGCATCCAAAATAC
TAATTATTCTGAATGAGAAAAACAATGTTTATACAATGGATAGGCAAAGA
AATATAGAAGGATATCAATAACCTATCTGAGTTTTTGTCTCTCCTGAGCT
TCCTAACATCCATTTAAAAAGTTGGTGTCATTCCAATGGACATTTAAGGA
GGAGAGAGGATTTGATGTTTATGTGATATGGTTTCTGAGGGCCAGGGCCT
TGTGGAAGGTCCTGCTGAGGGCACTCTTCACCTCATTATTTCTCAGGCTA
TAGATGATGGGGTTCAACATGGGAGTCACAACAGTGTAGGACAACGATAA
CAATTTCTTGCTTTCAGGAGAATTATTTGATTTAGGCCTAAAGTAAGTGA
GGCTTGAAGACACATAGAAAAGAGAGACAACGAGGAGATGTGAGGAACAG
GTGGAGAAGGCTTTGTGTTTCCCTTTAGCTGATGGAATCTTGAGGATGGA
AGCCGCAATGAGAGTGTATGAACATAGGATCAGCAGGCAGGGTATCATGA
CAACCAGAATAGTCCCAACAATGGCATATACTTCAAATTGTGCTGTGTCT
GCACAGACCAGCCTCAGCACAGGT
NAAAAACCCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTCACTCCTACTC
TTAGGATCCCCCAACAAGTCCTTTCCTCATATCTAAGGCTTTTTGTTTTG
CTTGTGATTGTGTTGGTTAACTAGATATGGCTTTCATAGATTGATGTATT
TTAATTCTTGGTCATAGGAAGTGGCCCCATTAGGAGGTATGGCCTTGTTG
AAGTAGATGTGGCCTTGTTGGAGTAGATTTGGCCTTGTTAGAGGATTGTG
CTACTGTGGAGGTAGGGCTTTGATGTCTTAAATGCTTAAGCTATGCCCAG
TGAAACACATCCAGTCTTCTTCTGCTGCCTCTGGATCAAGATGTAGAACT
ATTGGCTCCATCTCCAGTGCCATGTTTCCTACCATAATGACAATGGAATA
AGCCTCTGAAAAAGTAAGCCAACCTCAAAGAAATGTTTTTCTTTTATAAT
ATCTGCAGATGCCAGGCATGGGGGAGTGGGAGGGAATCTCTGCGAACTCC
AGGAGTACACAGGATGAGGGCATCAGTGGGGATGATCTTAGCCAAGATGC
TTAACAATTGGGATATGAAACCTGAAGAGGCTACCTCCTGTAGACAGACA
GGACCCCCAGCGGAAGGATAAGGACACTAATCCACCCATAAAATATTGAA
CTCAAAATTTGTCCTGTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_o14.b1 MSMg01no533_o14.b1 CHROMAT_FILE:
MSMg01no533_o14.b1 PHD_FILE: MSMg01no533_o14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:14 2005
         (416 letters)



>mm_chr7_114180118_114180933
          Length = 816

 Score =  797 bits (412), Expect = 0.0
 Identities = 415/416 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggatatcaataacctatctgagtttttgtctctcctgagcttcctaacatccatttaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ggatatcaataacctatctgagtttttgtctctcctgagcttcctaacatccatttaaaa 557

                                                                       
Query: 61  agttggtgtcattccaatggacatttaaggaggagagaggatttgatgtttatgtgatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 agttggtgtcattccaatggacatttaaggaggagagaggatttgatgtttatgtgatat 497

                                                                       
Query: 121 ggtttctgagggccagggccttgtggaaggtcctgctgagggcactcttcacctcattat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ggtttctgagggccagggccttgtggaaggtcctgctgagggcactcttcacctcattat 437

                                                                       
Query: 181 ttctcaggctatagatgatggggttcaacatgggagtcacaacagtgtaggacaacgata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ttctcaggctatagatgatggggttcaacatgggagtcacaacagtgtaggacaacgata 377

                                                                       
Query: 241 acaatttcttgctttcaggagaattatttgatttaggcctaaagtaagtgaggcttgaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 acaatttcttgctttcaggagaattatttgatttaggcctaaagtaagtgaggcttgaag 317

                                                                       
Query: 301 acacatagaaaagagagacaacgaggagatgtgaggaacaggtggagaaggctttgtgtt 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 316 acacatagaaaagagagacaacgaggagatgtgaggaacaggtggagaaggctttgtgct 257

                                                                   
Query: 361 tccctttagctgatggaatcttgaggatggaagccgcaatgagagtgtatgaacat 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tccctttagctgatggaatcttgaggatggaagccgcaatgagagtgtatgaacat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)