Query= MSMg01no534_f22.b1 MSMg01no534_f22.b1 CHROMAT_FILE:
MSMg01no534_f22.b1 PHD_FILE: MSMg01no534_f22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:52 2005
(605 letters)
>mm_chr7_103441458_103442462
Length = 1005
Score = 634 bits (328), Expect = 0.0
Identities = 481/602 (79%), Gaps = 108/602 (17%)
Strand = Plus / Plus
Query: 4 ggaattctggggtgggatggagtggaggttgcaaataaaaataagatgaagtttgtaaaa 63
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 204 ggaattctggggagggatggagtagaggttgcaaataaaaataagatgaagtttgtgaaa 263
Query: 64 tcttgaaaatatcaccaagaaggccattctggggtcatgtaggtggcatccatgatgtag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcttgaaaatatcaccaagaaggccattctggggtcatgtaggtggcatccatgatgtag 323
Query: 124 tcccagttctgatgcttggggagagagacccaagatggtagaacagagggtagaacagag 183
||||||||||||||| |||||||||||||||||| || |||||||| |||||||||||||
Sbjct: 324 tcccagttctgatgcatggggagagagacccaaggtgctagaacagggggtagaacagag 383
Query: 184 ttggcaaggaaagtaataggaagaggagaattctggaagcaaagggaacacattgcatag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttggcaaggaaagtaataggaagaggagaattctggaagcaaagggaacacattgcatag 443
Query: 244 ggtcacgtggccagtggagatgggtaagcttctacactgaatatgttacaggtcattggg 303
|||||| ||||||
Sbjct: 444 ggtcac-------------atgggt----------------------------------- 455
Query: 304 gtaattccaagcactacagtgttgcaattggttcagtaggatacttggctgctgggttaa 363
|||
Sbjct: 456 ---------------------------------------------------------taa 458
Query: 364 ggacactcttgaagggatgtggcagtttgggtgctgagccttctggatgagagacgatat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ggacactcttgaagggatgtggcagtttgggtgctgagccttctggatgagagacgatat 518
Query: 424 cagcatccacaaggtatgaatggtagaaatggctagatggtgggtttgagtgatgtgagt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 cagcatccacaaggtatgaatggtagaaatggctagatggtgggtttgagtgatgtgagt 578
Query: 484 ggtaactgtggtacacagagtgatcttcctggatcagtaactaatccctgaatgctcctc 543
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 579 ggtaactgtggtacacagagtgatcttcctggatcagtaactaatctctgaatgctcctc 638
Query: 544 agaaggcaagaccctcagaaagtcagaagaattttccccatatagcttagagggaccctc 603
|||| |||||||||||||||||||||||| |||| |||||||||||| ||||||||
Sbjct: 639 agaaagcaagaccctcagaaagtcagaagttttttt---atatagcttagaaggaccctc 695
Query: 604 at 605
||
Sbjct: 696 at 697
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space: 592025
Effective search space used: 592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no534_f22.g1 MSMg01no534_f22.g1 CHROMAT_FILE:
MSMg01no534_f22.g1 PHD_FILE: MSMg01no534_f22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:52 2005
(619 letters)
>mm_chr7_103627232_103628250
Length = 1019
Score = 1151 bits (595), Expect = 0.0
Identities = 613/619 (99%)
Strand = Plus / Minus
Query: 1 agtccagggctcaaatccctctctttccacccggctgcctctttaatcagcacatttgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 agtccagggctcaaatccctctctttccacccggctgcctctttaatcagcacatttgta 760
Query: 61 cagcaggaactcgagcttccccagagactgttaatttaacaaattctggtcatgcctggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 cagcaggaactcgagcttccccagagactgttaatttaacaaattctggtcatgcctggc 700
Query: 121 ttccaaagatggttttctttacctgatgcaatgtcagagcatatgctatgagccccttcc 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 699 ttccaaagatggttttctttacctgatgcaatgtcagagcatatgctacgagccccttcc 640
Query: 181 cagagcactggtgagaccagtgtttaaccacaagccaccaccagttcctctatggccaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 cagagcactggtgagaccagtgtttaaccacaagccaccaccagttcctctatggccaca 580
Query: 241 gagcagggaaaaggcaagtgcttgttagttagaagaatcacacacgcagagttgctgctt 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 579 gagcagggaaaaggcaagtgcttgttagttagaagaatcacacacgcagatttgctgctt 520
Query: 301 gcgacctgcactccccatgtcacacaggcccaaagccacctagactttgaacaaaacagt 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 519 gcgacctgcactccccatgtcacacaggcccaaagccgcctagactttgaacaaaacagt 460
Query: 361 tcacagggatctgaattctaattctgagagacaccagctcctgaatcttggacatgttat 420
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 459 tcacagggatctgaattctaattctgagagacaccagctcctggatcttggacatgttat 400
Query: 421 tgctcttcttgtcagattggttaccaatctgtttgataaaacctggactatccatgatgg 480
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tgcccttcttgtcagattggttaccaatctgtttgataaaacctggactatccatgatgg 340
Query: 481 agtctttgtgagtcgaagccatggcttgttcacaccttggtatctagaagccagtaccgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 agtctttgtgagtcgaagccatggcttgttcacaccttggtatctagaagccagtaccgg 280
Query: 541 gcattggacttgcttagtaaatgtgtattggtgaaacacatcatagcttgaacccacatg 600
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gcattggacttgctcagtaaatgtgtattggtgaaacacatcatagcttgaacccacatg 220
Query: 601 aagccatgatagttagtct 619
|||||||||||||||||||
Sbjct: 219 aagccatgatagttagtct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space: 614481
Effective search space used: 614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
