BAC Information

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BAC

Clone NameMSMg01-534G15
Chromosome7 (Build37)
Map Location 69,553,933 - 69,554,524
singlet/doubletsinglet
Overlap genenone
Upstream geneB230209E15Rik, EG620934, LOC100041293, Ndn, Magel2
Downstream geneMkrn3, Peg12, Atp5l-ps1, EG665038, LOC669222, LOC384631, LOC622243, EG622251, Chrna7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534G15.T7 (MSMg01no534_g15.b1)MSMg01-534G15.TJ (MSMg01no534_g15.g1)
ACCAG602105AG602106
length773770
length of high quality
(start - end)
549 (36 - 584)593 (63 - 655)
definitionCHROMAT_FILE: MSMg01no534_g15.b1 PHD_FILE: MSMg01no534_g15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:55 2005CHROMAT_FILE: MSMg01no534_g15.g1 PHD_FILE: MSMg01no534_g15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGAT
CTTTCCAAGACTTTTATTAAGAAGGGATGGTGGATATTGTGAAATGCTTT
CTCAGCATCTAATGAGATGATCATGTGGTTTATTTTTTACATATTTTTAT
TAAGAATTTTCCTCAATTATATTTCCAATGCTATCCCACAAGTCCCCCAT
AACCTCCCCCACAATCCCCTACCCACCCATTCCCACTTTTTGGCCCTGGC
ATTCCCCCGTACTCGGGCATATAAAGTTTGCGTGTCCAATGGGCCTCTCT
TTCCAGTGATGGCCAACTAGGCCATTTTTTGAGTCCATTGATATTAAGAG
ATATTAAGCAAAAGTAATTGTTGCTTCCTTTTATTTTTGTTGTTAGAGTT
GGCATTCTGTTCTTGTGGCTGTTGAGGGATTACTTTCTTGCTTTTTCTAG
GGCCTGATTTCCGTCTTTGTATTGTTTTTTTTTTCTGTTATTATCCTTTG
AAGGGCTGGATTCATGGAAAGACAATGTGTGAATTTGTATTTGTCCTGGA
ATACTTTGGTTTCTCCATCTATGGTAATTGAGAGTTTGGCCGGGTATAGT
AGCCTGGGCTGGCATTTGTGTTCTCTTAGTGTCTGTATAACATCTGTCCA
GGCTCTTCTGGCTTTCATAGTCTCTGGTGAAAAGTCTGGAGTAATTCTGA
TAGGCCTGCCTTTATATGTTACTTGACCTTTTTCCCCTANGGCGTTTAAA
TTCTCTCTTTCATTAAGGCAGTT
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXATGGAGTCAGAAGTCGATAATTTCTTTCAATTCAATAC
ATGAGAGGGATGCATGCTAAAGGTGCTAAAGCTGTTTTGCAGCTTGAAGG
TTTGTCACTAAAAAGCAAAGTGGAAAGATGACTGTGTGCTCAGTTTGTGA
CATCTGTATAAGAGAGTTAAAGAATATTGTCGCCATAAGATGTACATATT
TGTTGCTTCATTCTGAAATAAATTTGATGAGACCCATGATGCATTTGTGT
ATATGGTTATAGGATTTGTACCAGGGGAGAATGAAGAAAAACTATTTGCA
TAAAAAGAGTAGAAACTGCACTAGGGACAGTGATGACATGTCCATCAGGA
TAAGATAAACATCAGTGAGAACATGAGGAGGTAGACATGGAACATGCAAG
TTGTGGGGTGAAGGGTTCACAACAGAAAAATAGTGGGGGACCCAGAAAAC
AGCAGAGGCACTAGAATGGAACCACAATAAATAATCAAGGAAAAGATACT
CAAATATTGGATACAGATTGAAATGATGGCAGAAAACCATTCATTTAGCT
GAACAGATGTAGGAAAACAGTTCCGAAGAAATTATTTCAGATCAAGCAAA
CACAAACACCAGGTGGTACAGAGAACTCTGGAAACATACAGAGCAAGTGG
AAAGATGTATGTGAAATGAAAATGTTACTCTCTACTTGTGTTTCCTATGT
GCCATTAACTAGAGCTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_g15.g1 MSMg01no534_g15.g1 CHROMAT_FILE:
MSMg01no534_g15.g1 PHD_FILE: MSMg01no534_g15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:56 2005
         (593 letters)



>mm_chr7_69553733_69554724
          Length = 992

 Score = 1108 bits (573), Expect = 0.0
 Identities = 588/593 (99%), Gaps = 1/593 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggagtcagaagtcgataatttctttcaattcaatacatgagagggatgcatgctaaag 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 atggagtcagaagtcgataatttctttcaatttaatacatgagagggatgcatgctaaag 260

                                                                       
Query: 61  gtgctaaagctgttttgcagcttgaaggtttgtcactaaaaagcaaagtggaaagatgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgctaaagctgttttgcagcttgaaggtttgtcactaaaaagcaaagtggaaagatgac 320

                                                                       
Query: 121 tgtgtgctcagtttgtgacatctgtataagagagttaaagaatattgtcgccataagatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 tgtgtgctcagtttgtgacatctgtataagagagttaaagaatattgtcaccataagatg 380

                                                                       
Query: 181 tacatatttgttgcttcattctgaaataaatttgatgagacccatgatgcatttgtgtat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacatatttgttgcttcattctgaaataaatttgatgagacccatgatgcatttgtgtat 440

                                                                       
Query: 241 atggttataggatttgtaccaggggagaatgaagaaaaactatttgcataaaaagagtag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atggttataggatttgtaccaggggagaatgaagaaaaactatttgcataaaaagagtag 500

                                                                       
Query: 301 aaactgcactagggacagtgatgacatgtccatcaggataagataaacatcagtgagaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaactgcactagggacagtgatgacatgtccatcaggataagataaacatcagtgagaac 560

                                                                       
Query: 361 atgaggaggtagacatggaacatgcaagttgtggggtgaagggttcacaacagaaaaata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgaggaggtagacatggaacatgcaagttgtggggtgaagggttcacaacagaaaaata 620

                                                                       
Query: 421 gtgggggacccagaaaacagcagaggcactagaatggaaccacaataaataatcaaggaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgggggacccagaaaacagcagaggcactagaatggaaccacaataaataatcaaggaa 680

                                                                       
Query: 481 aagatactcaaatattggatacagattgaaatgatggcagaaaaccattcatttagctga 540
           || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 681 aa-atactcaaatattggatacagattgaaatgatggcagaaacccattcatttagctga 739

                                                                
Query: 541 acagatgtaggaaaacagttccgaagaaattatttcagatcaagcaaacacaa 593
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 740 acagatgtaggaaaacagttccgaagaaatgatttcagatcaagcaaacacaa 792


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 992
Length adjustment: 10
Effective length of query: 583
Effective length of database: 982
Effective search space:   572506
Effective search space used:   572506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)