Query= MSMg01no534_k02.b1 MSMg01no534_k02.b1 CHROMAT_FILE:
MSMg01no534_k02.b1 PHD_FILE: MSMg01no534_k02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:12 2005
(622 letters)
>mm_chr7_116961976_116962997
Length = 1022
Score = 932 bits (482), Expect = 0.0
Identities = 575/628 (91%), Gaps = 41/628 (6%)
Strand = Plus / Plus
Query: 5 gaattctggagttttaggcatgtattaccatctgtctagtttaccaaatgtatttctttt 64
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 205 gaattctggagttttaggcatgtattaccgtctgtctagtttaccaaatgtatttctttt 264
Query: 65 ttaaaatatttattcatttatctattttactccttatctaatgtgtacagctgttttgtc 124
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taaaaatatttattcatttatctattttactccttatctaatgtgtacagctgttttgtc 324
Query: 125 tgcatatgtgtctgtgaaccacgcatatgccgagtagccttagatgccctgggactgggg 184
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 325 tgcatatgtgtctgtgaaccacgcttatgccgagtagccttagatgccctgggactgggg 384
Query: 185 ttacagacagtcatgagttgccatgtgggtgctggaatcaaatccaagtcttctgggaga 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 385 ttacagacagtcatgagttgccatgtgggtgctggaatcaaatccaagtcttctggaaga 444
Query: 245 ccagtgagtgctcttaactgctgagccacctctccatcaaccccagcccctcaagatcaa 304
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 445 tcagtgagtgctcttaactgctgagccacca-tccatcaaccccagccgctcaagatcaa 503
Query: 305 ccccagtgcttcacttatgctcagcaaaacaaaaaacaacaacaacaaaaaaaaacccaa 364
||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 504 ccccagtgcttcacttatgctcagcaaaacaaaaaacaa----aacaaaa-------caa 552
Query: 365 aaacaaaaacaaaaaccctcacaaaacacaaaaaacaacaaacaagcaaaacaaaacaat 424
|||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aaac--------------tcacaaaacacaaaaaacaacaaacaagcaaaacaaaacaat 598
Query: 425 ttaaaaatccttgtaaaatggagttgccttcctatttatttatttgtattt------ata 478
||||||||||||||||||||||||||| ||||||||||||||||| |||| |||
Sbjct: 599 ttaaaaatccttgtaaaatggagttgctttcctatttatttattt--atttgtgcttata 656
Query: 479 tctgtgtgtgtttgtgtacttgttcatgtgtatacctgtatgtgtaattgcagggagatg 538
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 657 tctgtgtgtgtttgtgtactt---catgtgtatacctgtatgtgtaattgcagggagatg 713
Query: 539 tcagacacatatga----aatctttttcaattgctctctaccttccttcttgagaaagga 594
|||||| | |||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 714 tcagacccgtatgttggcaatctttctcaattgctctctaccttccttcttgagaaagga 773
Query: 595 ttacattgagacctggagcttaccaatt 622
||||||||||||||||||||||||||||
Sbjct: 774 ttacattgagacctggagcttaccaatt 801
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space: 619344
Effective search space used: 619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no534_k02.g1 MSMg01no534_k02.g1 CHROMAT_FILE:
MSMg01no534_k02.g1 PHD_FILE: MSMg01no534_k02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:12 2005
(637 letters)
>mm_chr7_117134644_117135680
Length = 1037
Score = 611 bits (316), Expect = e-179
Identities = 357/374 (95%), Gaps = 9/374 (2%)
Strand = Plus / Minus
Query: 265 ctctgagttccatcctcacc-aaaaaactgctctaaccatccatgtctgtgtcttttgat 323
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 1037 ctctgagttccatcctcaccaaaaaaactgctctaaccatccatgtctctgtcttttgat 978
Query: 324 ggacaagcattttcagacgccaaatggccaaatgtgagcattttagaactgctgggacaa 383
|||||||||||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct: 977 ggacaagcattttcag--g-----t-gccaaatgtgagcattttagaactgctgggacaa 926
Query: 384 aagttggttgttggcttagttgtatgagaaactgccagttttccagagctcttggatcat 443
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 aagttggctgttggcttagttgtatgagaaactgccagttttccagagctcttggatcat 866
Query: 444 ttaatcatttaacattcccaacagtaatctgtaaatacctcttatcccttgagaaactaa 503
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 ttaatcatttaatattcccaacagtaatctgtaaatacctcttatcccttgagaaactaa 806
Query: 504 gtcaggagggaaaaactcttttaattcacccgtttatgactttcggtttttcgccatttt 563
|||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||
Sbjct: 805 atcaggagggaaaaactcttttaattcacccatttatgactttgggttttttgccatttt 746
Query: 564 ctcagagagcttcatttccttttgctatcatcttccagcagttcctacattccaagtctg 623
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctcagagagcttcatttccttctgctatcatcttccagcagttcctacattccaagtctg 686
Query: 624 ctgatgacaaagag 637
||||||||||||||
Sbjct: 685 ctgatgacaaagag 672
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space: 643929
Effective search space used: 643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
