BAC Information

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BAC

Clone NameMSMg01-534O08
Chromosome7 (Build37)
Map Location 128,422,201 - 128,610,311
singlet/doubletdoublet
Overlap geneHs3st2
Upstream geneAbca14, Abca15, Abca16, LOC668429, LOC546994, LOC100042914, E130201H02Rik, LOC637957, Uqcrc2, 4930408O21Rik, BC030336, E030013G06Rik, EG436008, LOC100043426, Eef2k, Polr3e, Cdr2, 4933427G17Rik, EG668548, Mettl9, LOC668456, Igsf6, Otoa, LOC668556
Downstream geneUsp31, Scnn1g, Scnn1b, Cog7, Gga2, Ears2, Ubfd1, Ndufab1, Palb2, Dctn5, Plk1, Ern2, 2010110P09Rik, Prkcb1, LOC668486
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534O08.T7 (MSMg01no534_o08.b1)MSMg01-534O08.TJ (MSMg01no534_o08.g1)
ACCAG602474AG602475
length720714
length of high quality
(start - end)
179 (46 - 224)603 (72 - 674)
definitionCHROMAT_FILE: MSMg01no534_o08.b1 PHD_FILE: MSMg01no534_o08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:33 2005CHROMAT_FILE: MSMg01no534_o08.g1 PHD_FILE: MSMg01no534_o08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,422,201 - 128,422,373)(128,609,709 - 128,610,311)
sequence
GCGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTTCTTACCAAGGATATGAACTAAAACAGTGGGGATTCGAGGGA
ATGTGGATTCAGAAGACCGCCCTCCCCCAAGCCTAAGCCATCTCTTGAAT
GCAAGGGGAGGGGAAGATGTTAGGTGGCTCATGTTGTGTCCAGTGTTAGA
TTCCAGACAGGGAGGAACAGTGGNTACAGTGGNGGAAACTCACTTCACCC
TTCTGAGTTTGAGGTTCTCNTGCACAGGGTTCTTTTGTTCATGGGTTTTG
ATTTTTTGGGAAATTATCCTCCCCCCAAAAGAACCTTTTGTTGGGGTGGT
CCCAAAAAGGTCTTTTGGCATCCCCCCAAAAAAAACTGGGTGGGGGCTTC
TTAAGTGGTGGGGGCCCCTTTGGTGAAAAAAAAGATTTTTATTTTTTTGG
GNNAGGGGCGCTTTTCTCCCCCTCCCACGGGGGAGGAACCCCCCCCCCGC
CCCTTTTCATTTGGGTGTGTTTTCTACACAAAAGAAAATGAACTACCCCT
CTGTCGTTCCTTGTAAAAATATATAATAAACATCTTTTTTCTATTCGTTT
TTTTATAGAGGTGCTGCCGGTGCATTTTTCTTGTCGTCCTTTGTCTTTTT
TCCCCCTTTTTTTTCATCCCTTTTTATATTTATTAATGCCACTACCATTT
CCTTTACACTCTTTTTTCTC
TTGATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGAGGAAGATTTCAGATACAGATGGACTT
GAAGGGAGAATTCAGTGGTGGAGTTGCTACTTTCAGATTAATTTACACCA
CAGCGTTCCCCAGAGGGGCCGACAGACTGATGGATGGCAGTGCCTCCTGG
GTGTGCAGCCACATTAATGCTGTCCTGAACTCAGCTCATTAGCTCCAAGT
CACTCTCCAACCCTCAGTGCACCTCAGACGCAGTTAATCTCATGCGAAAT
GGGGCCAAATCACTCGGGCCATGTGTTCACAATGTCAGGTCCCTGAGGTG
GCTTCCCAACAGGGCTGCCAAGCCTGCAAAGGGTGTTGAAATCCATGACT
CATTTGCCATCTGTCTTTGCCCTTTCAAGGACACAGGACAACTGACAAGA
GCACAGTGTACAAAAGGGGCTCAATTGCTTTCTGATGGAACATCATAGTA
GTAGTCTCAAAGACACGAGAGCTCATTACATCACCAGTCCTTCCTGTAGG
ACATCTAGAGATCTCTAGAGATGATCTTTAAGGCAAAAAACACATGGTGG
ATTCATAGGAATACAAGAAGGCAACAATTCAAACTGGTTATCTACTCAGA
AAGCAGAGCCTGGACTTGGGGTTATTTAGGCAGAATGACAGGACTGGCAT
TGAATTTGCAGTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_o08.b1 MSMg01no534_o08.b1 CHROMAT_FILE:
MSMg01no534_o08.b1 PHD_FILE: MSMg01no534_o08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:33 2005
         (179 letters)



>mm_chr7_128421997_128422575
          Length = 579

 Score =  327 bits (169), Expect = 3e-94
 Identities = 172/173 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctttcttaccaaggatatgaactaaaacagtggggattcgagggaatgtggatt 64
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctttcttaccaaggatgtgaactaaaacagtggggattcgagggaatgtggatt 264

                                                                       
Query: 65  cagaagaccgccctcccccaagcctaagccatctcttgaatgcaaggggaggggaagatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagaagaccgccctcccccaagcctaagccatctcttgaatgcaaggggaggggaagatg 324

                                                                
Query: 125 ttaggtggctcatgttgtgtccagtgttagattccagacagggaggaacagtg 177
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttaggtggctcatgttgtgtccagtgttagattccagacagggaggaacagtg 377


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 579
Length adjustment: 8
Effective length of query: 171
Effective length of database: 571
Effective search space:    97641
Effective search space used:    97641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no534_o08.g1 MSMg01no534_o08.g1 CHROMAT_FILE:
MSMg01no534_o08.g1 PHD_FILE: MSMg01no534_o08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:33 2005
         (603 letters)



>mm_chr7_128609509_128610511
          Length = 1003

 Score = 1143 bits (591), Expect = 0.0
 Identities = 600/603 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaggaagatttcagatacagatggacttgaagggagaattcagtggtggagttgctact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 agaggaagatttcagatacagatggacttgaagggagaattcagtggtggagttgctact 744

                                                                       
Query: 61  ttcagattaatttacaccacagcgttccccagaggggccgacagactgatggatggcagt 120
           ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ttcagataaatttacagcacagcgttccccagaggggccgacagactgatggatggcagt 684

                                                                       
Query: 121 gcctcctgggtgtgcagccacattaatgctgtcctgaactcagctcattagctccaagtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gcctcctgggtgtgcagccacattaatgctgtcctgaactcagctcattagctccaagtc 624

                                                                       
Query: 181 actctccaaccctcagtgcacctcagacgcagttaatctcatgcgaaatggggccaaatc 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 623 actctccaaccctcagtgcacctcagacgcagttaatctcatgcaaaatggggccaaatc 564

                                                                       
Query: 241 actcgggccatgtgttcacaatgtcaggtccctgaggtggcttcccaacagggctgccaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 actcgggccatgtgttcacaatgtcaggtccctgaggtggcttcccaacagggctgccaa 504

                                                                       
Query: 301 gcctgcaaagggtgttgaaatccatgactcatttgccatctgtctttgccctttcaagga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gcctgcaaagggtgttgaaatccatgactcatttgccatctgtctttgccctttcaagga 444

                                                                       
Query: 361 cacaggacaactgacaagagcacagtgtacaaaaggggctcaattgctttctgatggaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cacaggacaactgacaagagcacagtgtacaaaaggggctcaattgctttctgatggaac 384

                                                                       
Query: 421 atcatagtagtagtctcaaagacacgagagctcattacatcaccagtccttcctgtagga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 atcatagtagtagtctcaaagacacgagagctcattacatcaccagtccttcctgtagga 324

                                                                       
Query: 481 catctagagatctctagagatgatctttaaggcaaaaaacacatggtggattcataggaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 catctagagatctctagagatgatctttaaggcaaaaaacacatggtggattcataggaa 264

                                                                       
Query: 541 tacaagaaggcaacaattcaaactggttatctactcagaaagcagagcctggacttgggg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tacaagaaggcaacaattcaaactggttatctactcagaaagcagagcctggacttgggg 204

              
Query: 601 tta 603
           |||
Sbjct: 203 tta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)