BAC Information

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BAC

Clone NameMSMg01-534O13
Chromosome7 (Build37)
Map Location 145,182,980 - 145,183,462
singlet/doubletsinglet
Overlap genenone
Upstream geneMgmt, EG621804, Ebf3, 9430038I01Rik, Txnl2
Downstream geneLOC435235, Tcerg1l, LOC100043290, Mapk1ip1, Ppp2r2d, Bnip3, EG668784, LOC669185, 6330417G02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534O13.T7 (MSMg01no534_o13.b1)MSMg01-534O13.TJ (MSMg01no534_o13.g1)
ACCAG602484AG602485
length753810
length of high quality
(start - end)		488 (36 - 523)172 (67 - 238)
definitionCHROMAT_FILE: MSMg01no534_o13.b1 PHD_FILE: MSMg01no534_o13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:34 2005CHROMAT_FILE: MSMg01no534_o13.g1 PHD_FILE: MSMg01no534_o13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATATG
CTTTCCCATTGAGGATGTCAGCTGTTTGAAAAGATCTTTCAAACATTTGA
CAAATTCGTATTAAATATTTAAATGTAGATAGCCTTTAACCTAGCAGCCT
CAATTCTAGTGATCTTGCTGAAGAGTAATTGGGCAATTATGCAAGACACA
GATTGCTCAATTATTCTTTACAGAAGATTACAGTAGGCAAAAGTACAACA
AGAGTCAGGAAAGAGGGAGGAAGGGAAGGAAGGAGGAGGGGAGGTCAACA
GTCAACTCTCCTGGACCCTTGGGGTTCTCAGAGACTGAACCACCAAGCAA
AGAACATACACGGCCTGGACCTAGGCCTCCCTGCCCATATGTAGTAGATG
TGCAGCTTGGTCTTCCTGTGGGTCCCAAACAACTGGAGAGGGGGTTATCC
CAAAAGCTGTTGCCAGTACATGGGATATGTTCTTGCTGGGTTGCCTTCTC
TAGTCTCAGTGGNGAGAGAAAGTGTCTACCCTTCTCAAAAGACTTGAAAT
TGGCCAAGGTAAGGGGGAAAACCCCCGGGGGTTTCCCAACACAAAAAAAA
AAAGGGGAAGAAGGGTTTGTGGGAAAAAAAAATTTTTTTTGATCATTTAC
TTTTTTACCTTCCTTCTGTTTCTTTTTCTCCGCCCTCTGTTTTTCCTTCT
CCCTTTTTTTTGTTGGCCNCTACTTTCTTTTTCTTCCCCTCCCCCCACCT
TTG

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGGTTATCAGGCTTGCCTAGCAAGCACCTTTACC
TGATGAAACATGTCGTTGCCTAGAGATAGGTAGGTAGGTAGATAGATAGA
TAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATG
ATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATTGTTAGAT
AGATAGATANATAGATAGATGGGTGGGCGGGTGGTCTGGTGGGCGGCAGG
CTGGGTGTTTTTTTTGCTCCCCCTCTCCTTGTCTTTATTTCCGCCTGTTT
TCTCTACTGTTTGTTTCGCGGGGGGTTCCCGCGTTTCATTTTTTGCTGTG
CCTCCCCCCCTCACNCCTTCTACTTCTTGCCGGCGTCGCGCCGCCGTTGC
GTTTTTCTCTCGCCGTTCGCCGCCCTCCTTCTCTCCTTTCTTCCCTGCTC
CGTTTTTTCTCCCTCCGCGTTTTCGCTGTTATCGTTCCTCTCCCATCTAT
CTCTCTCTTTACTAACCCCGTCTCCCCTTTTTTCTCCCGTCCCCCGTTTG
CCCGTTCCCTCCTTCTCCCGTCTTTCCGTCTCCCCCCCATCTTCCCGTCT
TACAACCTTTTTTTCTTCCTATTTCTTACCCTGTGCCGGCTCCTGCCAAT
CCCGTCTCTATTTTTTCTCATCACGTCTCTTCTTTTGTGTTCGTGTTGCA
CCTCGTACCTCTCTTCTTTTCCCCCCTTTTATTCCTCACTCTCACGCTCA
CCGTCCTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_o13.b1 MSMg01no534_o13.b1 CHROMAT_FILE:
MSMg01no534_o13.b1 PHD_FILE: MSMg01no534_o13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:34 2005
         (488 letters)



>mm_chr7_145182776_145183663
          Length = 888

 Score =  905 bits (468), Expect = 0.0
 Identities = 480/484 (99%), Gaps = 1/484 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatatgctttcccattgaggatgtcagctgtttgaaaagatctttcaaacatttg 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatatgccttcccattgaggatgtcagctgtttgaaaagatctttcaaacatttg 264

                                                                       
Query: 65  acaaattcgtattaaatatttaaatgtagatagcctttaacctagcagcctcaattctag 124
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acaaattcatattaaatatttaaatgtagatagcctttaacctagcagcctcaattctag 324

                                                                       
Query: 125 tgatcttgctgaagagtaattgggcaattatgcaagacacagattgctcaattattcttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgatcttgctgaagagtaattgggcaattatgcaagacacagattgctcaattattcttt 384

                                                                       
Query: 185 acagaagattacagtaggcaaaagtacaacaagagtcaggaaagagggaggaagggaagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acagaagattacagtaggcaaaagtacaacaagagtcaggaaagagggaggaagggaagg 444

                                                                       
Query: 245 aaggaggaggggaggtcaacagtcaactctcctggacccttggggttctcagagactgaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaggaggaggggaggtcaacagtcaactctcctggacccttggggttctcagagactgaa 504

                                                                       
Query: 305 ccaccaagcaaagaacatacacggcctggacctaggcctccctgcccatatgtagtagat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccaccaagcaaagaacatacacggcctggacctaggcctccctgcccatatgtagtagat 564

                                                                       
Query: 365 gtgcagcttggtcttcctgtgggtcccaaacaactggagagggggttatcccaaaagctg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtgcagcttggtcttcctgtgggtcccaaacaactggagagggggttatcccaaaagctg 624

                                                                       
Query: 425 ttgccagtacatgggatatgttcttgctgggttgccttctctagtctcagtggngagaga 484
           |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 625 ttgccagtacatgggatatgttcttgctgggttgccttctctggtctcagtgg-gagaga 683

               
Query: 485 aagt 488
           ||||
Sbjct: 684 aagt 687


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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