BAC Information

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BAC

Clone NameMSMg01-535B17
Chromosome7 (Build37)
Map Location 27,613,080 - 27,613,788
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043732, EG623475, Cyp2b10, LOC232993, EG667957, BC026762, Cyp2b13, EG668047, LOC623532, Cyp2b9, LOC667968, Cyp2a4, Nlrp9c, LOC100043195, Nlrp4a, Nlrp9a, V1re12, EG243881, LOC623830, Cyp2b19, Cyp2g1
Downstream geneLOC100043745, Cyp2a5, EG233005, EG330491, Cyp2a12, LOC100043199, Cyp2f2, Gm1450, Egln2, Rab4b, Mia1, Snrpa, Itpkc, Adck4, Numbl, Ltbp4, Shkbp1, Spnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3, 2310022A10Rik, Akt2, Ttc9b, Map3k10, C030039L03Rik, Zfp60, LOC100043229, LOC100043233, 4933426I21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-535B17.T7 (MSMg01no535_b17.b1)MSMg01-535B17.TJ (MSMg01no535_b17.g1)
ACCAG602634AG602635
length774675
length of high quality
(start - end)		697 (46 - 742)---
definitionCHROMAT_FILE: MSMg01no535_b17.b1 PHD_FILE: MSMg01no535_b17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:49 2005CHROMAT_FILE: MSMg01no535_b17.g1 PHD_FILE: MSMg01no535_b17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:49 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ACAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGACAGTCAGGGATATACAGAGAAACCCTGTCTCGAAAAACCA
AAAAAAAAAAAAAAAAAATTCAAGCTCTGTTCTGTCTGGTTGTTTCCTCT
GGGTGGGAGGAGTATTCTCCACCATGAAAACAACTGGGCCTTGCAGCACT
CTCCACCAGGAAAACAGCAGGGCCCTGGTTCCCCACCAGGAAAACAGCAG
GCATGCTGTGGAATGCATGGGGAGACAGGTTTGATAGATGCATGGACAGA
AGTAGCCTGGAAGAAGAATGGATTCTTATCTAATCACTTAACAACCCCAG
TTTCATTTAAGAGTATATAATCTACACATATGCATGACTGTACATGGCAG
ATGATTAACAGTTTGTTAGTAAGAAGGCTGTCCATGCCTAGAGATAGGTC
TTATTTTGTGCAATTGTTTCTGGCATTTTCTCAGCTTCCTGTAAGGAATT
GTAGCATACTGGGGAAGACACTGGAAATTATTATTAAAAAAGGACCTCAT
TGTTGTTAAAGGAAACCAAGTCCAAAGTGTGTACATTTCTCCTTCACCGT
CGAAAGGAAGGAGGTTGTGTCCTTAGTTGGTTCTGTGAGTTCAGAATGCT
GTTCATTTGCTTTGTTCTTTCTTTGTTTTCTCCCCTTTTTTGAGCTGGCT
GTTAAACCTTAACACCTTTTATCTGAGGACTGCCTAACTGGTTTTCCATG
ATTCTCCATCAGCTGGAAGTAACN

AAGAAAGCTGNCNGCCGCTGNTTTCCAATTANGGAACTAAAAGATCGCGA
ATCAAACTAATAAATATGAAATAAGGACGAAAAAAAACCAAACACAAGAA
ATCTTCCACCTAAACCAATAAAATAAGAAATTGCAACAAAAAATGTAAAT
TGTTTATGTTTATAAAGAGAGGAATGGGGGAAGAGAAAGGGCGAAGGGGC
TTTTAAAAAAAGAAAAAAAAACGGAGGGGCCCAAAAAAATTTTCACAAAA
AAAAAAAAAAAAAATTTTCCAAAAAATAAAAAAAAAAAAAATTTTGTTTT
AAAAAAACNNNAAAAAAAAAAAAACACACCNNGGGGTCCCCACACTTTAA
AAAAAAAAAAAGTCTTATAAAAAAAAAATACTCCCCCCCCACAAAAAAAA
AAAAAAAAAAAACCCCGGNGGNNAAACCCCCCCCCCTCCNNNTCCCCCTC
CCCCCCCCCNTNTTTTTAAAAAAAAAAAAAAAAAAAAACCCCCCCCCCCC
CCCCACCCTCTCTTTGAAAAAAAAAAAAAAANAAAAAAAAAAAAAACCCC
CCCCCCCTCCCCCCCCCCTTTATTTNTAAAAAAAATAATTCTCTACAAAA
AAAAAAAAAAAAAAAAAAAAAAATTTATTTCTTTCTCCCCCTCCTCCCCC
CCTACCATCATAAAAAATAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no535_b17.b1 MSMg01no535_b17.b1 CHROMAT_FILE:
MSMg01no535_b17.b1 PHD_FILE: MSMg01no535_b17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:49 2005
         (697 letters)



>mm_chr7_27612822_27613917
          Length = 1096

 Score = 1187 bits (614), Expect = 0.0
 Identities = 678/710 (95%), Gaps = 18/710 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaggacagtcagggatatacagagaaaccctgtctcgaaaaacc---------- 54
           |||||||||||||| |||||||||||||| ||| ||||||||||||||||          
Sbjct: 967 gaattccaggacagccagggatatacagaaaaatcctgtctcgaaaaaccaaaaaaaaaa 908

                                                                       
Query: 55  -------aaaaaaaaaaaaaaaaaaattcaagctctgttctgtctggttgtttcctctgg 107
                  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 aaaaaaaaaaaaaaaaaaaaaaaaaattcaagctctgttctgtctggttgtttcctctgg 848

                                                                       
Query: 108 gtgggaggagtattctccaccatgaaaacaactgggccttgcagcactctccaccaggaa 167
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 gtgggaggagtattctccaccatgaaaacaactgggccttgcagcactctccaccaggaa 788

                                                                       
Query: 168 aacagcagggccctggttccccaccaggaaaacagcaggcatgctgtggaatgcatgggg 227
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 aacagcagggccctggttccccaccaggaaaacagcaggcatgctgtggaatgcatgggg 728

                                                                       
Query: 228 agacaggtttgatagatgcatggacagaagtagcctggaagaagaatggattcttatcta 287
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 727 agacaggtttgatagatgcatggacagaagtagcctggaagaagaacggattcttatcta 668

                                                                       
Query: 288 atcacttaacaaccccagtttcatttaagagtatataatctacacatatgcatgactgta 347
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 667 atcacttaacaaccccagttttgtttaagagtatataatctacacatatgcatgactgta 608

                                                                       
Query: 348 catggcagatgattaacagtttgttagtaagaaggctgtccatgcctagagataggtctt 407
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 catggcagatgattaacagtttgttagtaagaaggctgtccatgcctagagataggtctt 548

                                                                       
Query: 408 attttgtgcaattgtttctggcattttctcagcttcctgtaaggaattgtagcatactgg 467
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 attttgtgcaattgtttctggcattttctcagcttcctgtaaggaattgtagcatactgg 488

                                                                       
Query: 468 ggaagacactggaaattattattaaaaaaggacctcattgttgttaaaggaaaccaagtc 527
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 487 ggaagacactggaaattattattaaaaaaggacctcattgttgttaacggaaaccaagtc 428

                                                                       
Query: 528 caaagtgtgtacatttctccttcaccgtcgaaaggaaggaggttgtgtccttagttggtt 587
           ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 427 caaagcgtgtacatttctccttcaccatcgaaaggaaggaggttgtgtccttagttggtt 368

                                                                       
Query: 588 ctgtgagttcagaatgctgttcatttgctttgttctttctttgttttctccccttttttg 647
           ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 367 ctgtgagttcagaatgctgctcatttgctttgttctttctttgttttctccc-ttttttg 309

                                                             
Query: 648 agctggctgttaaaccttaacaccttttatctgaggactgcctaactggt 697
           ||||| |||||||||||||||| || ||||||||| ||||||||||||||
Sbjct: 308 agctgactgttaaaccttaacaactgttatctgagaactgcctaactggt 259


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1096
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1086
Effective search space:   746082
Effective search space used:   746082
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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