Query= MSMg01no535_l05.b1 MSMg01no535_l05.b1 CHROMAT_FILE:
MSMg01no535_l05.b1 PHD_FILE: MSMg01no535_l05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:35 2005
(682 letters)
>mm_chr7_27873939_27875020
Length = 1082
Score = 1191 bits (616), Expect = 0.0
Identities = 650/678 (95%), Gaps = 26/678 (3%)
Strand = Plus / Plus
Query: 5 gaattctttctcatcctggttgtcccaccttctatttccttactaagccataggccatag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttctcatcctggttgtcccaccttctatttccttactaagccataggccatag 264
Query: 65 gctttttaattgataggtgatgcaaccatacaatacacaagatactctacatctattagt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gctttttaattgataggtgatgcaaccatacaatacacaagatactctacatctattagt 324
Query: 125 caacatactatacatacacacacatatatgtgcatatgtctacatgaatccagcatgtcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caacatactatacatacacacacatatatgtgcatatgtctacatgaatccagcatgtcc 384
Query: 185 acttggcctgccccatgtgactactgcttatgatcatttaagttacatgcctgccacata 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acttggcctgccccatgtgactactgcttatgatcatttaagttacatgcctgccacata 444
Query: 245 aaattataaaagtgctcattgcagaacctctggggagaaagtctttgtcaaactctttca 304
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaattataaaagtgctaattgcagaacctctggggagaaagtctttgtcaaactctttca 504
Query: 305 caccctcctgccgattccagtgccatatcagctcaagtttgataagccataggcagtggc 364
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 505 caccctcctgccgattccagtgccatatcagctcgagtttgataagccataggcagtggc 564
Query: 365 atctcctaaaagaataagctatccctttaagagccatacaggcatccactcttcccaaca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atctcctaaaagaataagctatccctttaagagccatacaggcatccactcttcccaaca 624
Query: 425 ctgtattgtgaccatgtagaaaagtgaagaaatgccaaaagatttcaacagaaaattacc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctgtattgtgaccatgtagaaaagtgaagaaatgccaaaagatttcaacagaaaattacc 684
Query: 485 atgtagcccttaccgtgattgaccccaacattacctgtcacaatcagtgtgtaccacata 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atgtagcccttaccgtgattgaccccaacattacctgtcacaatcagtgtgtaccacata 744
Query: 545 atggcatttcatgggtaaaacactgttttgtggcttttgagagagagagagagagagaga 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atggcatttcatgggtaaaacactgttttgtggcttttgagagagagagagagagagaga 804
Query: 605 gagagagagagagagagagagagagagagaggtaaaaactgacatttttttccttgaact 664
||||| |||||||||||||||||||||||||||||
Sbjct: 805 gagag--------------------------gtaaaaactgacatttttttccttgaact 838
Query: 665 gggacagcatctacagcc 682
||||||||||||||||||
Sbjct: 839 gggacagcatctacagcc 856
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space: 720384
Effective search space used: 720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no535_l05.g1 MSMg01no535_l05.g1 CHROMAT_FILE:
MSMg01no535_l05.g1 PHD_FILE: MSMg01no535_l05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:36 2005
(675 letters)
>mm_chr7_28013103_28014175
Length = 1073
Score = 864 bits (447), Expect = 0.0
Identities = 479/491 (97%), Gaps = 4/491 (0%)
Strand = Plus / Minus
Query: 186 agatccgttagcctctgcctccagagtgcgggtataaaaagctgtaccatcaagttgtct 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1073 agatccgttagcctctgcctccagagtgcgggtataaaaagctgtaccatcaagttgtct 1014
Query: 246 cctctgtgtgcgtgtgtgactacccctgactaggaactggccatggaactaaggatgaca 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013 cctctgtgtgcgtgtgtgactacccctgactaggaactggccatggaactaaggatgaca 954
Query: 306 acccctgaacctccactctccatttcccaagtgttgggattacaggtttgtaccaccatg 365
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 953 acctctgaacctccactctccatttcccaagtgttgggattacaggtttgtaccaccatg 894
Query: 366 catcagacttctcacgggagatttagtggaagggaaggcaactaactgcttgagaattga 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 catcagacttctcacgggagatttagtggaagggaaggcaactaactgcttgagaattga 834
Query: 426 ctgcggaagcactgaaacttacgcctgtggggatgtctcaagtctttggaaagtccatct 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 ctgcggaagcactgaaacttacgcctgtggggatgtctcaagtctttggaaagtccatct 774
Query: 486 tgtctctgaatgttgaatgagtgcgtggttgaacttgttactggggcggagtaagtgatg 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 tgtctctgaatgttgaatgagtgcgtggttgaacttgttactggggcggagtaagtgatg 714
Query: 546 tagggaaagatcgcgggggcgcacgacctagaccccgaccagcatcagaaaccaagtgct 605
||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||
Sbjct: 713 tagggaaagatcgcgggggcgcacgacctagaccctgaccagaatcagaagccaagtgct 654
Query: 606 ctttcca-gcgagacactcggtggcatccgaggctccgccccacatcactcgtcaactcg 664
|||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 653 ggttccctgcgagacacacggtggcatccgaggctccgccccaca---ctcgtcaactcg 597
Query: 665 tcacttccggc 675
|||||||||||
Sbjct: 596 tcacttccggc 586
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1073
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1063
Effective search space: 706895
Effective search space used: 706895
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
