BAC Information

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BAC

Clone NameMSMg01-535O11
Chromosome7 (Build37)
Map Location 38,780,382 - 38,942,256
singlet/doubletdoublet
Overlap geneC80913, Ccne1
Upstream geneLOC100043874, Zfp536, LOC100043453, EG627844
Downstream gene1600014C10Rik, Plekhf1, Pop4, LOC668519, LOC100043464, 1700010N08Rik, EG627975, EG625594, EG627983, EG434171, LOC100043467
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-535O11.T7 (MSMg01no535_o11.b1)MSMg01-535O11.TJ (MSMg01no535_o11.g1)
ACCAG603244AG603245
length753747
length of high quality
(start - end)		702 (50 - 751)387 (77 - 463)
definitionCHROMAT_FILE: MSMg01no535_o11.b1 PHD_FILE: MSMg01no535_o11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:51 2005CHROMAT_FILE: MSMg01no535_o11.g1 PHD_FILE: MSMg01no535_o11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,780,382 - 38,781,079)(38,941,870 - 38,942,256)
sequence
NNNACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATCCTCTAGTTCCTAAACCTGTTACCAAAAACAAGACGCAC
ATGTCCACAGAATGAAACTGCCTCTAAGGGTTACTCATAAATAAGTCACT
TTGGCCAAATCTACAAAAGAAAAGCCTTCTCTGGCCAAGGTCTTGCACAC
ACTTCACATTTTAAGCTGAATTGAATACATAGTGCAAAGTGAACAGTCCA
TTATGGAAATGCTGACAGACCTACACCACCAGTGGATGCAATTACAATGC
TGCATTTATTGAAAATTAATGAAGTCCTGGATTTTTATTTATAAAGTGGG
TATTATTAGTTTTAGATTGGTTTCTGCAAGCCAATAGTCCAAATTGAATA
AGATGATGGGTACAGATTGCACTGATCTTCACTCTTATCCATTCCTTGCA
GCCTATGTGCATTTAAACCAAAAACATTTGATATACACTAACTATAAATT
ATTTCCTTGGAGATCTCTCAGGCATGAAGAAAATGCCTTTTAAAATAAAT
TTAAAATATTATATGCTTGATGGTGTATAACCGAAGGTTTAATCTCCCCA
CTAAAGGGGCAGTTATGACGATTTTGCAATAACCCTGCAGACAATAATCA
GGACAGCTCCTGTTGTTCTCTCAGTAAAATCTTCGTAAACACAGCATGGA
TAGACTGTAATTTGATATCTGTAAGATCAACAGCCATACCTCATGACATC
TCN

NCCCCATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATGGCAAGGATGGCGTGGCTAGC
TTAATTGCTGGTCTAAAGTTCAAGCTAGATCCAGTTTGACCTCTGACCTG
CCACCTTTCCCCCGCCCACTCCATCTTTGCAGGAAACTGTCCAAACCATG
TCCTCAGGCTCAGAAGGTGTCCAGCTGGGCCCAGGCAGGCACATCGGCCT
TGGGCAGTGCACAGCAGCTGGTCTGCTCTGGGGCTCAGAGCACCCCGGGC
CAGTCTTGCTCACCATCCCTTCAGGCATGGGTGTGCTGAAACAAAAGACT
GCAACTGCCACCAAGCCATCTTTCTTTGCAGGCAGCTAGGTTCTTTAGGG
GTGGAGAAGGCTTCCTTTCTTTGCATTACTTCACAGTGAGGAACCATGTT
CATGTGGACATGAAGGAGCTTCTATTCAAACACCTTTGAGTCAGAAGACC
ATCTCTGAGCAGCCTGAGCTACAATGAAACCCATCAGTGCTGAATAGGCT
GAGGCAGAAAGACTGAGAGTTCGAGGCCGGCCTTAAACTCTCTCAAAACA
AACATGCACACTAAACAGCTGCCACCTCCCTCAAAACCCCATTGCTTGTA
TAGACAGAAACACGTGTGTGTGTGTGAGTGTGTGAGTGTGAGTGCGCGAA
TATAAATACGTACACATGTTGATAAGACTATTTCCTATTGGGAGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no535_o11.b1 MSMg01no535_o11.b1 CHROMAT_FILE:
MSMg01no535_o11.b1 PHD_FILE: MSMg01no535_o11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:51 2005
         (702 letters)



>mm_chr7_38780178_38781279
          Length = 1102

 Score = 1350 bits (698), Expect = 0.0
 Identities = 698/698 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatcctctagttcctaaacctgttaccaaaaacaagacgcacatgtccacagaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatcctctagttcctaaacctgttaccaaaaacaagacgcacatgtccacagaat 264

                                                                       
Query: 65  gaaactgcctctaagggttactcataaataagtcactttggccaaatctacaaaagaaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaaactgcctctaagggttactcataaataagtcactttggccaaatctacaaaagaaaa 324

                                                                       
Query: 125 gccttctctggccaaggtcttgcacacacttcacattttaagctgaattgaatacatagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gccttctctggccaaggtcttgcacacacttcacattttaagctgaattgaatacatagt 384

                                                                       
Query: 185 gcaaagtgaacagtccattatggaaatgctgacagacctacaccaccagtggatgcaatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcaaagtgaacagtccattatggaaatgctgacagacctacaccaccagtggatgcaatt 444

                                                                       
Query: 245 acaatgctgcatttattgaaaattaatgaagtcctggatttttatttataaagtgggtat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acaatgctgcatttattgaaaattaatgaagtcctggatttttatttataaagtgggtat 504

                                                                       
Query: 305 tattagttttagattggtttctgcaagccaatagtccaaattgaataagatgatgggtac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tattagttttagattggtttctgcaagccaatagtccaaattgaataagatgatgggtac 564

                                                                       
Query: 365 agattgcactgatcttcactcttatccattccttgcagcctatgtgcatttaaaccaaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agattgcactgatcttcactcttatccattccttgcagcctatgtgcatttaaaccaaaa 624

                                                                       
Query: 425 acatttgatatacactaactataaattatttccttggagatctctcaggcatgaagaaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acatttgatatacactaactataaattatttccttggagatctctcaggcatgaagaaaa 684

                                                                       
Query: 485 tgccttttaaaataaatttaaaatattatatgcttgatggtgtataaccgaaggtttaat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgccttttaaaataaatttaaaatattatatgcttgatggtgtataaccgaaggtttaat 744

                                                                       
Query: 545 ctccccactaaaggggcagttatgacgattttgcaataaccctgcagacaataatcagga 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctccccactaaaggggcagttatgacgattttgcaataaccctgcagacaataatcagga 804

                                                                       
Query: 605 cagctcctgttgttctctcagtaaaatcttcgtaaacacagcatggatagactgtaattt 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cagctcctgttgttctctcagtaaaatcttcgtaaacacagcatggatagactgtaattt 864

                                                 
Query: 665 gatatctgtaagatcaacagccatacctcatgacatct 702
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 865 gatatctgtaagatcaacagccatacctcatgacatct 902


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1102
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1092
Effective search space:   755664
Effective search space used:   755664
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no535_o11.g1 MSMg01no535_o11.g1 CHROMAT_FILE:
MSMg01no535_o11.g1 PHD_FILE: MSMg01no535_o11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:51 2005
         (387 letters)



>mm_chr7_38941670_38942456
          Length = 787

 Score =  748 bits (387), Expect = 0.0
 Identities = 387/387 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatggcaaggatggcgtggctagcttaattgctggtctaaagttcaagctagatccagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 tatggcaaggatggcgtggctagcttaattgctggtctaaagttcaagctagatccagtt 528

                                                                       
Query: 61  tgacctctgacctgccacctttcccccgcccactccatctttgcaggaaactgtccaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 tgacctctgacctgccacctttcccccgcccactccatctttgcaggaaactgtccaaac 468

                                                                       
Query: 121 catgtcctcaggctcagaaggtgtccagctgggcccaggcaggcacatcggccttgggca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 catgtcctcaggctcagaaggtgtccagctgggcccaggcaggcacatcggccttgggca 408

                                                                       
Query: 181 gtgcacagcagctggtctgctctggggctcagagcaccccgggccagtcttgctcaccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gtgcacagcagctggtctgctctggggctcagagcaccccgggccagtcttgctcaccat 348

                                                                       
Query: 241 cccttcaggcatgggtgtgctgaaacaaaagactgcaactgccaccaagccatctttctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 cccttcaggcatgggtgtgctgaaacaaaagactgcaactgccaccaagccatctttctt 288

                                                                       
Query: 301 tgcaggcagctaggttctttaggggtggagaaggcttcctttctttgcattacttcacag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tgcaggcagctaggttctttaggggtggagaaggcttcctttctttgcattacttcacag 228

                                      
Query: 361 tgaggaaccatgttcatgtggacatga 387
           |||||||||||||||||||||||||||
Sbjct: 227 tgaggaaccatgttcatgtggacatga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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