BAC Information

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BAC

Clone NameMSMg01-536B13
Chromosome7 (Build37)
Map Location 97,026,917 - 97,027,363
singlet/doubletsinglet
Overlap geneCcdc81
Upstream geneTmem135, LOC100039969, Fzd4, Prss23, LOC100040001, Me3
Downstream genel7Rn6, Eed, E230029C05Rik, EG384719, 2310010J17Rik, Picalm, Ccdc83, Sytl2, Ccdc89, Crebzf, Tmem126a, Tmem126b, B230218P12Rik, LOC666689, LOC621816, LOC100039943
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-536B13.T7 (MSMg01no536_b13.b1)MSMg01-536B13.TJ (MSMg01no536_b13.g1)
ACCAG603392AG603393
length777855
length of high quality
(start - end)
448 (71 - 518)106 (79 - 184)
definitionCHROMAT_FILE: MSMg01no536_b13.b1 PHD_FILE: MSMg01no536_b13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:06 2005CHROMAT_FILE: MSMg01no536_b13.g1 PHD_FILE: MSMg01no536_b13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGC
GGAATTCATCAGGATATTGATATACTTTAAGAATTTTAAAAGACCATTTG
GCTTTTGTGTGAAGAACTGGCTGTAGGGGACAATTGAAAAGACAGGACAG
AGGTTTGCCTATAATGTGTCCTGGGGAAAGATGGTAATGTTGCTGATAAA
GAGATTGGGGCAAATATTGGCTATCCTGGGGAGATGAATGCAACTGGACT
TGTGGATTTGCACTTGAGGGAGAGAGAAAGAAGCCAGAAATTAATCACTC
CCACATGAAGTGTTTTTTACAACTTGCTGCCTGGAGATGGCAGCCTGCAC
AGAATCTTAACTCTGTGACACTGGCATAGTCCAATTTACTCAAGCACAAG
AAAAAACAGTGGGATCCAGATTAGGACAGAGTCAGAACTTCTATCTTAGT
ATTTCTGCAAAGAGGTACAAATTGGGGCCATAAGTGTAATCTATAGCTTC
TACTGTAGGAAGGTGGAGGTCATGCCTAAATGCCAAGAGCCCAGTGCTTT
CTTTCCCTCCTTGATGCTCTTGCCTGGAGATCTCCCCCTTCATTTCCTTC
TTTGCCCAGCTCTTTACATGTAGGAAACAGTCCTAGATCCCTAATCTGGA
TTAAGTGACCTCCTTGCTCATATAGAGCTCTCTTCGAAGATTTCGCAGCT
TCTATACTACATTCGGCTCTTAGAGGGTCTGTCTCCCCCAACTGATACTT
CATAGAATAGGTATTTGTACTTCTTAT
CCTCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCATAGAGCGGCCGTTGAATCTT
TGATCAGATGATTGTGGACACCCCCTGCATTAAGAATTTTTTTTTTGGTT
TTGGTTAGGTTTGGTTTGGTTTGGTTTGGTTTNGNNCNNNNNTCTTTTAC
CCTTGATATTCATTCTTATTGCCTACTCGCCCCCACCTGTACAGCCCTTG
TTACCCCACTCACAATTTATCTACAAATGCGTGCGCACATCTATGATCCC
CTCCCCCTCTCCCCCTCACCCCCCACCATCCTTCCTATCCTCCTTACTTA
TATCCCCTCACCACCCACCTTTTACCAAAACTACCCCCAAACCCCCCCCC
CCCCAATCCCCCACTTCTTTTTCCCCCCCCCCCCCCCCTTCTTTCCACCT
CTTTTCATTCCCTTCACCCCGCCCCCCCCTTACCTCTAACAACCTATCCC
CCTATCCCCTTTCCCACTCCCCCCCCCCTCCCTCCCCTTCCCCCCTACCG
CCATCTCCCCCTCCATCCCCCCCGCCCCCTAATTACATTATTACTCCAAC
TCTACCCCACCCCTTTACCCCCTCCCTTTCCCCTCCCACTTTCCCTCCCC
CCTTTTCTTCTCCCTCCTCCTCCTCTCCTCACACTGTCCCACTTTTTTAT
CCACTGCCCGCCTCACTTTTTACATTTCCCCCTATTTACCGCGACCCCCA
CCCTACCCCCCCGTCATAATCCCCCCCACCTTCTCTCCCCACAATATACC
TCTCTCCACCCCCCCCCTCTCTCTCTCTCTCCCCCCTTTCCCACCCACTA
ACCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no536_b13.b1 MSMg01no536_b13.b1 CHROMAT_FILE:
MSMg01no536_b13.b1 PHD_FILE: MSMg01no536_b13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:06 2005
         (448 letters)



>mm_chr7_97026717_97027563
          Length = 847

 Score =  851 bits (440), Expect = 0.0
 Identities = 446/448 (99%), Gaps = 1/448 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatactttaagaattttaaaagaccatttggcttttgtgtgaagaactggctgtagggga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatactttaagaattttaaaagaccatttggcttttgtgtgaagaactggctgtagggga 260

                                                                       
Query: 61  caattgaaaagacaggacagaggtttgcctataatgtgtcctggggaaagatggtaatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caattgaaaagacaggacagaggtttgcctataatgtgtcctggggaaagatggtaatgt 320

                                                                       
Query: 121 tgctgataaagagattggggcaaatattggctatcctggggagatgaatgcaactggact 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 tgctgataaagagattggggcaaatattggctatcttggggagatgaatgcaactggact 380

                                                                       
Query: 181 tgtggatttgcacttgagggagagagaaagaagccagaaattaatcactcccacatgaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtggatttgcacttgagggagagagaaagaagccagaaattaatcactcccacatgaag 440

                                                                       
Query: 241 tgttttttacaacttgctgcctggagatggcagcctgcacagaatcttaactctgtgaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgttttttacaacttgctgcctggagatggcagcctgcacagaatcttaactctgtgaca 500

                                                                       
Query: 301 ctggcatagtccaatttactcaagcacaagaaaaaacagtgggatccagattaggacaga 360
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 ctggcatagtccaatttactcaagcacaagaaaaa-cagtgggatccagattaggacaga 559

                                                                       
Query: 361 gtcagaacttctatcttagtatttctgcaaagaggtacaaattggggccataagtgtaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gtcagaacttctatcttagtatttctgcaaagaggtacaaattggggccataagtgtaat 619

                                       
Query: 421 ctatagcttctactgtaggaaggtggag 448
           ||||||||||||||||||||||||||||
Sbjct: 620 ctatagcttctactgtaggaaggtggag 647


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 847
Length adjustment: 10
Effective length of query: 438
Effective length of database: 837
Effective search space:   366606
Effective search space used:   366606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)