Query= MSMg01no536_d03.b1 MSMg01no536_d03.b1 CHROMAT_FILE:
MSMg01no536_d03.b1 PHD_FILE: MSMg01no536_d03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:14 2005
(597 letters)
>mm_chr7_126330212_126331204
Length = 993
Score = 994 bits (514), Expect = 0.0
Identities = 573/594 (96%), Gaps = 4/594 (0%)
Strand = Plus / Minus
Query: 4 ggaattcaccatattctcttaccccaagactaagagcatcccaagccagtctcaacacct 63
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 793 ggaattcaccatacactcttaccccaagactaagagcatcccaagccagcctcaacacct 734
Query: 64 taggtacattctgatgcaaacatacatttccttgaggaacagtctgtaactggccaatca 123
||||||||||| |||||| |||||||||||||||||||| || ||||| ||||||||
Sbjct: 733 taggtacattcccatgcaagcatacatttccttgaggaac--tc--taactagccaatca 678
Query: 124 tcccaagggggccaggaggtaatagagagttctttctcactctcttggggctgctgtctg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tcccaagggggccaggaggtaatagagagttctttctcactctcttggggctgctgtctg 618
Query: 184 cccttctctcaccatacccctgctctttctgctcaacatctcagagacaacaacgctccc 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 617 cccttctctcaccatacccctgctctttctgctcaacatctcagagacaacaacactcct 558
Query: 244 gctttgcttcatcccattttacatatggaaaagtaaatgtgtgggtacaagtaggtcctt 303
||||||||||||||||||||| | ||||| |||||||||||||||||| |||||||||||
Sbjct: 557 gctttgcttcatcccattttatagatggagaagtaaatgtgtgggtacgagtaggtcctt 498
Query: 304 caataaccctcatgcagtccctttgcccagccaggttctataaaggctctctagcaatgg 363
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 497 caatagccctcatgcagtccctttgcccaaccaggttctataaaggctctctagcaatgg 438
Query: 364 gccttggtattttaaccacttggaagtatcaaatcaaatatgatcattgcatgctaaatc 423
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 437 gccttggtattttaaccacttggaagtatcaaatcaaataggatcattgcatgctaaatc 378
Query: 424 tgaggctgtgtccccaactccagcactgacccacctatgctgcaaagataaagtcatgct 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 377 tgaggctgtgtccccaactccagcactgacccacctatgctgcaaagataaagtcacgct 318
Query: 484 ctgccgcctcaactactggatgttgcagatttcgttctctccatgtgttttgactctgca 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ctgccgcctcaactactggatgttgcagatttcgttctctccatgtgttttgactctgca 258
Query: 544 atctgcaggtgttgtgtaaagctgcatccagaaccccacagacaaaagttcttg 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 atctgcaggtgttgtgtaaagctgcatccagaaccccacagacaaaagttcttg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 993
Length adjustment: 10
Effective length of query: 587
Effective length of database: 983
Effective search space: 577021
Effective search space used: 577021
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no536_d03.g1 MSMg01no536_d03.g1 CHROMAT_FILE:
MSMg01no536_d03.g1 PHD_FILE: MSMg01no536_d03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:14 2005
(548 letters)
>mm_chr7_126201069_126202016
Length = 948
Score = 785 bits (406), Expect = 0.0
Identities = 486/548 (88%), Gaps = 55/548 (10%)
Strand = Plus / Plus
Query: 1 aagttaagcacattgcaagaagggttgtcaggggactggatagaatataggaaacatgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagttaagcacattgcaagaagggttgtcaggggactggatagaatataggaaacatgac 260
Query: 61 cagtggcctcttgttgtggctctttcccaactgtccttagcttacttatgatggacaatc 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 cagtggcctcttgttgtggctctttcccaaatgtccttagcttacttatgatggacaatc 320
Query: 121 tacttgtgtggcacaagaagcatggcagctattggtgttgactttagaaaattatggtaa 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 tacttgtgtggcacaagaagcatggcagctattggtgttgactttagaaaatcatggtaa 380
Query: 181 taccagccagacgaaagccacaacccattgcattctgttgctttaaaaacaaaaacaaaa 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taccagccagacgaaagccaccacccattgcattctgttgctttaaaaacaaaaacaaaa 440
Query: 241 ccaaccaaccaatcaaacaaaaaaccccaaccaaccaaccaaccaaccaaccaaccagcc 300
||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 ccaaccaaccaatcaaacaaaaaaccccaaccaaccaaccaacca------------gcc 488
Query: 301 accaccaccactaccacaagaccaccccaatcttctcattggttggactgagatcagatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 accaccaccactaccacaagaccaccccaatcttctcattggttggactgagatcagatg 548
Query: 361 cctgttccagaaccaatcagttgtgacttgaggtcacagaacatggcagctgataaagaa 420
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 cctgttctagaatcaatcagttgtgacttgaggtcacagaacatggcagctgataaagaa 608
Query: 421 atcttgtggagggaactggtagaggaccagttcctggaggaagcacgaagttctagggga 480
|||||||||||||||||
Sbjct: 609 -------------------------------------------cacgaagttctagggga 625
Query: 481 aacagaatggtagctaatgcctcagcgatgttcaaccctcccttacctgaaatgggtttc 540
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 626 aacagaatggtagctaatgccgcagcgatgttcaaccctcccttacctgaaatgtgtttc 685
Query: 541 tagtgtgt 548
||||||||
Sbjct: 686 tagtgtgt 693
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
