Query= MSMg01no536_k11.b1 MSMg01no536_k11.b1 CHROMAT_FILE:
MSMg01no536_k11.b1 PHD_FILE: MSMg01no536_k11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:49 2005
(510 letters)
>mm_chr7_109570311_109571220
Length = 910
Score = 917 bits (474), Expect = 0.0
Identities = 501/510 (98%), Gaps = 2/510 (0%)
Strand = Plus / Plus
Query: 2 gaattcagttagatgctctacctcctgttgactaaggggtcagtgtaaacagaggcagga 61
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 202 gaattcagttagatgctctacctcctgttgacttaggggtcagtgtaaacagaggcagga 261
Query: 62 atcactaagcaagggcccctaggttgtggctctggttaacagagtagccttgacatagac 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atcactaagcaagggcccctaggttgtggctctggttaacagagtagccttgacatagac 321
Query: 122 tgagaagcactcagagcctgatctgttatttgccatgccatttatgtgtactgccatttg 181
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 322 tgagaagcactcagagcctgatctgttatttgccatgccatttatgtgcactgccatttg 381
Query: 182 tgtctttggacttaggtgtggaaacagatcaagtgtctctggaaaggctccagtgttgca 241
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tgtctttggactcaggtgtggaaacagatcaagtgtctctggaaaggctccagtgttgca 441
Query: 242 agaagcttggttccattcaaggaaggcgg-atggtggggggtgggcaccacagtccagag 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 442 agaagcttggttccattcaaggaaggcgggatggtggggggtgggcaccacaggccagag 501
Query: 301 agcggaggtgcagactcagcagttgtgcctccagctgggtgtagactctgaatggttggt 360
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 agcggaggtgcagacccagcagttgtgcctccagctgggtgtagactctgaatggttggt 561
Query: 361 gggcatgagcctggacagccaactttgtgactatcagcagtgggccctgtggtaagcaaa 420
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 562 gggcatgagcctggacagccaacttggtgactatcagcagtgggccctgtggtaagcaaa 621
Query: 421 agacataaatgctgagctgggcgaggtacagatgggcatatggggagtcacagctcccgc 480
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 622 agacataa-tgctgagctgggcgaggtacagatgggcaaatggggagtcacagctcccgc 680
Query: 481 tctagcatgtgcccacgtgatgaaccatgt 510
||||||||||||||||||||||||||||||
Sbjct: 681 tctagcatgtgcccacgtgatgaaccatgt 710
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space: 450000
Effective search space used: 450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no536_k11.g1 MSMg01no536_k11.g1 CHROMAT_FILE:
MSMg01no536_k11.g1 PHD_FILE: MSMg01no536_k11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:49 2005
(633 letters)
>mm_chr7_109694062_109695097
Length = 1036
Score = 855 bits (442), Expect = 0.0
Identities = 447/450 (99%), Gaps = 3/450 (0%)
Strand = Plus / Minus
Query: 1 atagcagcaccccttcaaccccaatgtttttctgtgaagataaattaaattttatcaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 atagcagcaccccttcaaccccaatgtttttctgtgaagataaattaaattttatcaaat 391
Query: 61 tttaa---caatcgttgaataaagaataagatgttttagtggaccagtttattagacaga 117
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tttaagttcaatcgttgaataaagaataagatgttttagtggaccagtttattagacaga 331
Query: 118 ggtaaagatcattagtaaaaatcaaccacaagttaggaaaatatttccccatgtgatttt 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ggtaaagatcattagtaaaaatcaaccacaagttaggaaaatatttccccatgtgatttt 271
Query: 178 ttttaaaaaatcacaaaaataataaagagccttggaggttaggggcagaagacagagatg 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ttttaaaaaatcacaaaaataataaagagccttggaggttaggggcagaagacagagatg 211
Query: 238 taaaataagaaacatccaagttagtggaatcagcccagttgtccatcaacatatgatgaa 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 taaaataagaaacatccaagttagtggaatcagcccagttgtccatcaacatatgatgaa 151
Query: 298 taaagaaaaatgtggtgtatttatacacacatcatttcattcaaccataaaaggattaaa 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 taaagaaaaatgtggtgtatttatacacacatcatttcattcaaccataaaaggattaaa 91
Query: 358 tcacagagaaatgaatacaactggagaccattatattgggcaaagtaagtcagattcaaa 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 tcacagagaaatgaatacaactggagaccattatattgggcaaagtaagtcagattcaaa 31
Query: 418 aagacaaacatctctttttctctctcatct 447
||||||||||||||||||||||||||||||
Sbjct: 30 aagacaaacatctctttttctctctcatct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1036
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1026
Effective search space: 639198
Effective search space used: 639198
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
