Query= MSMg01no536_k21.b1 MSMg01no536_k21.b1 CHROMAT_FILE:
MSMg01no536_k21.b1 PHD_FILE: MSMg01no536_k21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:51 2005
(582 letters)
>mm_chr7_115536868_115537850
Length = 983
Score = 683 bits (353), Expect = 0.0
Identities = 525/589 (89%), Gaps = 21/589 (3%)
Strand = Plus / Minus
Query: 5 gaattccttttagtatcctggctataaaatgatgggtggccacacaattgagggttatat 64
||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 719 gaattccttttagtaaacaggctataaaattatgggtggccacacaattgagggttatat 660
Query: 65 aaattaggaccaatattagagtggaatttcagctttctgatgggtaatacaaagtctgca 124
||||||||| |||||| | |||||||||||||||||||||||||| |||||| ||||| |
Sbjct: 659 aaattaggaacaatatcaaagtggaatttcagctttctgatgggttatacaatgtctgta 600
Query: 125 aaa--gttta-taaagatcacattaaatttacaaatcagacttccagttgtaaac---cc 178
||| | | |||||||||||||||||||||||||| |||||||||||||| || |
Sbjct: 599 aaactg---agtaaagatcacattaaatttacaaatctgacttccagttgtatacagttc 543
Query: 179 attaagtattttaaattcttttaaataggtcattgttcttcaaagtaatttgaaatatca 238
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 542 attaagtattttaaattcttctaaataggtcattgttctttaaagtaatttgaaatatca 483
Query: 239 attctaccatcatgttttatgaatatacagcatgtttttagtaactatttagacata-cc 297
|||||| |||||||||||||||||||| |||||||| ||||||| | |||||||| | ||
Sbjct: 482 attctatcatcatgttttatgaatatatagcatgttattagtaattctttagacaaagcc 423
Query: 298 tattgcttttccagtgtcacatgttctctaactgaaatatttttgaatgaattcacttga 357
|||||||||||||||||| |||| ||||||||||||||||| |||||||||||| |||
Sbjct: 422 -attgcttttccagtgtcatgtgttttctaactgaaatattttcgaatgaattcacatga 364
Query: 358 tttttcaacaaaggacactggccagtattcagtctcagatgttaaaagatttatcaaggc 417
|||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 363 -ttttcagcaaaggacactgcccagtattcaatctcagatgttaaaagatttatcaaggc 305
Query: 418 tcacctagcaaggcacagattgaatgtaatttttcactttctatacttacacactccttt 477
|||||||||||||| ||||||||||||||||||||| |||||||||||||| ||| ||
Sbjct: 304 tcacctagcaaggctcagattgaatgtaatttttcagattctatacttacactctcattc 245
Query: 478 gtcttaaatgatgcctgtaaggctggcacattcactccaaa------caggcccttgcac 531
||||||| |||||||||| |||||| ||||||||||||||| ||| |||||||||
Sbjct: 244 gtcttaa-tgatgcctgtgaggctgtcacattcactccaaaaccaaccagacccttgcac 186
Query: 532 aggatatcctctaac-agtaagacaccaaaatatttcaaaactagtgaa 579
||| ||||| ||| | |||||| ||||||| |||||||||| |||||||
Sbjct: 185 agggtatccccta-ctagtaagccaccaaattatttcaaaattagtgaa 138
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 983
Length adjustment: 10
Effective length of query: 572
Effective length of database: 973
Effective search space: 556556
Effective search space used: 556556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no536_k21.g1 MSMg01no536_k21.g1 CHROMAT_FILE:
MSMg01no536_k21.g1 PHD_FILE: MSMg01no536_k21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:51 2005
(624 letters)
>mm_chr7_115431844_115432864
Length = 1021
Score = 1164 bits (602), Expect = 0.0
Identities = 618/624 (99%), Gaps = 3/624 (0%)
Strand = Plus / Plus
Query: 1 tagtcctattttcttgtgtttttccatggtgcctggagcgtgtgatactagactatgtag 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagttctattttcttgtgtttttccatggtgcctggagcgtgtgatactagactatgtag 260
Query: 61 acagaaaacagtctttattttcaggagacatttgtcatacaattaccaacctatgttaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagaaaacagtctttattttcaggagacatttgtcatacaattaccaacctatgttaaa 320
Query: 121 actagtgaatttatcagcattttttccttgatcactgagcttatatgctgttagagtcca 180
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 actagtgaatttatcagca-tttttccttgatcactgagcttacatgctgttagagtcca 379
Query: 181 tgggtttcccatctttttagtgttgggtaaataataaagatttgaaagttaattattcac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgggtttcccatctttttagtgttgggtaaataataaagatttgaaagttaattattcac 439
Query: 241 agcaataggactatgacaaatacttgatttaattaaattttttcttgattatacctgact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 440 agcaataggactatgacaaatacttgatttaattaaattttttcttgattatatctgact 499
Query: 301 gatttcccaactacagcttatgaatatactgtatacatttttcaaagaaccaaacattct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gatttcccaactacagcttatgaatatactgtatacatttttcaaagaaccaaacattct 559
Query: 361 tcaatgtggagggaagtcagtaatacacttaccttttggaataaggattcattctaaaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tcaatgtggagggaagtcagtaatacacttaccttttggaataaggattcattctaaaga 619
Query: 421 aagaaagtcaagataatgataagatggttttgtagcctcctagatgtctccctcaagcat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aagaaagtcaagataatgataagatggttttgtagcctcctagatgtctccctcaagcat 679
Query: 481 tgttaaccatggagactaagtatctgaagagtcttgggattcaaatgtgaattccaatcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgttaaccatggagactaagtatctgaagagtcttgggattcaaatgtgaattccaatcc 739
Query: 541 ccagggtccattatctcagagaaatgagtcatcattacccatgaacacaattttccagta 600
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ccagggtccattatctcaga--aatgagtcatcattacccatgaacacaattttccagta 797
Query: 601 ttcactctgacttttttcttttat 624
||||||||||||||||||||||||
Sbjct: 798 ttcactctgacttttttcttttat 821
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1021
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1011
Effective search space: 620754
Effective search space used: 620754
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
