BAC Information

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BAC

Clone NameMSMg01-536M08
Chromosome7 (Build37)
Map Location 92,553,178 - 92,553,498
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039239, Fah, Zfand6, 2610206C17Rik, EG620480, Olfr291, LOC666276, Olfr290, ENSMUSG00000070600, F830104D24Rik, LOC620641, EG620672, Vmn2r-ps68, EG620697, Vmn2r-ps69
Downstream geneLOC330581, LOC100039339, Vmn2r70, Vmn2r-ps72, EG233445, Vmn2r-ps74, EG244114, EG620928, EG546980, LOC666382, LOC637652, LOC637667, EG666418, LOC100039471, EG546981, Vmn2r-ps86, Vmn2r76, Olfr310, Olfr309, Olfr308, Olfr307, Olfr306-ps1, Olfr305, Olfr304, Olfr303
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-536M08.T7 (MSMg01no536_m08.b1)MSMg01-536M08.TJ (MSMg01no536_m08.g1)
ACCAG603902AG603903
length781792
length of high quality
(start - end)		527 (50 - 576)505 (81 - 585)
definitionCHROMAT_FILE: MSMg01no536_m08.b1 PHD_FILE: MSMg01no536_m08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:58 2005CHROMAT_FILE: MSMg01no536_m08.g1 PHD_FILE: MSMg01no536_m08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:58 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTTCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATCTTCTGGAGCTCTTTGTATATATTGGATATTAGTCCTCT
ATCAGATTTAGGATTGGTAAAAATATTTTCCCAATCTGTTGGTGGCCTTT
TTATCTTATTGACAGTAAATTTTGCCTTACAGAAGCTTTGCAATTTTATG
ATGTCCCATTTGTTGATTCCTGATCTTACAGCACAGGCCATTGCTGTTCT
GTTTAGGAATTTTTCCCCTGTGACCATCTCTCCAAGGCTTTTCTCCACTT
TCTCCTCTATGGATTTCAGTGTCTCTGGTTTTATGTGGAGGTCATTGATC
CACTTAGACTTGAGCTTTGTACAAGGAGGTAAAAATGGTTCAATTCACAT
TCTTCTACACGATAACCTCCAGTTGTGGCAGAACCATTTGTTGAAAATGC
TGTATTTTTTCTACTGGATGGTTTTAACTCCCTTGTCAAAGATGAAGTAA
CCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTTCATTGATC
TTCCTGTCTGTCACTGTATCAGTACCAAGCAATATTTATCACAATTTTTC
TGTAGTACAGCTTTAGGTCAGGCATGGTGATTATACCAGAGGATCTTTTG
TTGTTGAGAATAGTTTTTGCTATCCTACAGTTTTTTGGTCTTTTTTCTTT
GCTGGGTTTTTCGCCACCTCCAATGAATTTGCAATATGCCATTTCTATCC
CCGCGGTAAATAAATTTTTTATTTGGTCGGG

NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAAGATGAGATACCTTTGA
TGGGATTTTATGTGAAGATAAAGGAGAGATCCTGTTATTTTTTATGTGCG
TAAAAGCTAAGAGTGGAGTTTTACATGGGGCAAAGGAACATTCAATAAAG
AATAAATATTTAAACTAATAAGTATTATAGTTATATTTATAAATTAAGAG
TAAGATTAAGAGCCATAGTGTAAGTGGGAAAATGTATTATTTACATCTGT
CTACGGTTTCTCTGTGTATCCCTGGTTGTCCTGGAAATCACTCTGTAGAC
CATCCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCTAAGTGCT
GGGATTAAAGGCATGCACCACCACTGCCTGGCTTGGATTACTGCTTTCTT
AGAGATTAACTTCTTGTGCTCTTTATATATTTTGGATATTAGCCCTCTAT
CAGATGTAGGGTTATTGGAGAATTTTTTAACAATCTGTAGGATGCTAATT
TGTTCTATTGACTGTGATTTTTGCCTTATAGAATCTGTTCAGTCTTATGA
GGTCCCATTAATCAGTTGTTGATCTTAGGGCATAAGCCATTGCCAGTCTA
CTTAGAAAATTTAAATTTCCCCTTATGCCGATGAGTTTGAGGCTCTTTAC
ACTTTCTCTTTTATTAGATAAATTATATTTGTTTTTATGTTGAGGGCCCT
GGATCACTTGAATTTGATCTTTGTGCGAGAGGATAAAAAAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no536_m08.g1 MSMg01no536_m08.g1 CHROMAT_FILE:
MSMg01no536_m08.g1 PHD_FILE: MSMg01no536_m08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:58 2005
         (505 letters)



>mm_chr7_92553178_92554083
          Length = 906

 Score =  598 bits (309), Expect = e-175
 Identities = 318/321 (99%), Gaps = 1/321 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   aagatgagatacctttgatgggattttatgtgaagataaaggagagatcctgtta-tttt 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 aagatgagatacctttgatgggattttatgtgaagataaaggagagatcctgttattttt 262

                                                                       
Query: 62  ttatgtgcgtaaaagctaagagtggagttttacatggggcaaaggaacattcaataaaga 121
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatgtgcgtaaaacctaagagtggagttttacatggggcaaaggaacattcaataaaga 202

                                                                       
Query: 122 ataaatatttaaactaataagtattatagttatatttataaattaagagtaagattaaga 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataaatatttaaactaataagtattatagttatatttataaattaagagtaagattaaga 142

                                                                       
Query: 182 gccatagtgtaagtgggaaaatgtattatttacatctgtctacggtttctctgtgtatcc 241
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 gccatagtgtaagtggaaaaatgtattatttacatctgtctacggtttctctgtgtatcc 82

                                                                       
Query: 242 ctggttgtcctggaaatcactctgtagaccatcctggcctcaaactcagaaatctgcctg 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81  ctggttgtcctggaaatcactctgtagaccatcctggcctcaaactcagaaatctgcctg 22

                                
Query: 302 cctctgcctcctaagtgctgg 322
           |||||||||||||||||||||
Sbjct: 21  cctctgcctcctaagtgctgg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 906
Length adjustment: 10
Effective length of query: 495
Effective length of database: 896
Effective search space:   443520
Effective search space used:   443520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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