BAC Information

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BAC

Clone NameMSMg01-537C04
Chromosome7 (Build37)
Map Location 138,623,518 - 138,623,936
singlet/doubletsinglet
Overlap genenone
Upstream geneAte1, LOC100043163, Nsmce4a, Tacc2, LOC619876, Btbd16, EG434249, Plekha1, Htra1, Dmbt1, 4933402N03Rik, 5430419D17Rik, LOC546006, LOC100043173, Cuzd1, 1700007K09Rik, 1700063I17Rik, 2310057M21Rik, Pstk, Ikzf5, Acadsb
Downstream geneHmx3, Hmx2, Bub3, LOC677073, LOC100043679, Gpr26, Cpxm2, 4631426J05Rik, LOC100043682
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537C04.T7 (MSMg01no537_c04.b1)MSMg01-537C04.TJ (MSMg01no537_c04.g1)
ACCAG604178AG604179
length755752
length of high quality
(start - end)
458 (49 - 506)53 (305 - 357)
definitionCHROMAT_FILE: MSMg01no537_c04.b1 PHD_FILE: MSMg01no537_c04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:26 2005CHROMAT_FILE: MSMg01no537_c04.g1 PHD_FILE: MSMg01no537_c04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GATCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACTTTTTAATTCCAGCCTCAGCAGCAGCCAGGTGTGGTGGCT
CACCCCTTAATCCCAGTATGCCAGAGGCAGAGGCAGGCAGATCTCTGTGA
GCTCAAGCCTGGTCTACAGAGTAAGTTTCAGGGCAGCCATGGCTGTTACA
CAGAGAAACCTTGTCTCAAAGAACAGAACGGAACGGAACGGAATGGAACG
GAACGGAACAGAACAGAACAGAAATAAAACAATAAAAATCATCACCAACA
CGATTATCATTGGTTGCAGGAGGCTATTTCCATGCAAGCATATTATTTCT
CCAGATTCTCTCCCCTCCCTTCTCCCTTCCCCCTCTGTTGTTCCAGTTAT
TTCCTCTGTTCCCTGGACAGTATCACTTCCACTTTCTTTCTTTCTTCCTT
TCTTTCTTTCCTTCTTACTTATACCTTCTTTCTTTCTTGCTTTCTTTCTT
TCTTTCTTCCTTTCTTTCTTTCCTTCTTTCTTTCTTTCTTACTTTCTTTC
TCTTTTTTTATGAGCTTTTACATGCATGGTTTTCTCTGTCGTTCCCCGTT
TTGCTTGTCATTTAACTCTTTATACTCATCTTTCCTTTTTTTTCCATTCT
TTTTTGTCTTTTTCCTCTCTCTTCCTGCCGTTGTTTAGTTTGTTCTTCTT
CTGCCTTTCCCCTCTTCTATTTCACTTGTTACTTTTATTCCATTACGTGT
TTTTG
TGGGTATANNNNNANNANNNNGCCATAAATGGGATGACTGGGGGCCGCCG
GTTTTCGCAAATCGGGGGACTTTGAAAAGGTTTTCCCAAAAATGCCCTTC
GGAAAAAACGAAGGCGGAAAGAAACATTCTACAATGAGTTATCGCCCCCC
TTCCTTGGGGAAGAGGAAATGGAAAAACCCCGAGATTGTACTTCCCCCTC
CCCCCAGAGGGGAAGGGGTATAAAATCAATGTGTCCGTCACAACATGCTT
GGCGAGGATGAGAAGAAAGAAAAACACTCCTCCTCTGCTGTTGTGAGTGC
AAGTTTGTACAACCACTCTGGAAATCAGGCTGGCGGTTCCTCAGAATACT
GGACATAATACGACAGGAGGATCTAGCAGTACCTCTCCTGCCTATCTTTC
CCTGAGATGCACAAGACGCCCAAAAAGGTAAGAAGGACACATGCTCCACT
ATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAG
ATGCCCCTCAACAGAGGAATGGATACAGAACATGTGGTACATCTACACAA
TGGAGTACTACTCAGCTATTAAAAAGATTGAATTTATGATATTTCCTAGC
CAAATGGATGGACCTTGAAGGGCATCATTCCTGGAGTAAGGTAAACACTT
TCTCTAAGAAAACTTCCCCAATTATGTATTTCCCTGGAATAAGTGGTATA
TTAATCCCCCTAAACCCTAGGGAACCCCCTAGTATTTAAAAAAAATAACT
TC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_c04.b1 MSMg01no537_c04.b1 CHROMAT_FILE:
MSMg01no537_c04.b1 PHD_FILE: MSMg01no537_c04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:26 2005
         (458 letters)



>mm_chr7_138623284_138624141
          Length = 858

 Score =  650 bits (336), Expect = 0.0
 Identities = 407/450 (90%), Gaps = 32/450 (7%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactttttaattccagcctcagcagcagccaggtgtggtggctcaccccttaatc 64
           |||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 235 gaattcactttttaaaaccagccccagcagcagccaggtgtggtggctcaccccttaatc 294

                                                                       
Query: 65  ccagtatgccagaggcagaggcaggcagatctctgtgagctcaagcctggtctacagagt 124
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 295 ccagtatgccagaggcagaggcaggcaggtctctgtgagctcaagcctggtctacagagt 354

                                                                       
Query: 125 aagtttcagggcagccatggctgttacacagagaaaccttgtctcaaagaacagaacgga 184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||       
Sbjct: 355 gagtttcagggcagccatggctgttacacagagaaaccttgtctcaaagaaca------- 407

                                                                       
Query: 185 acggaacggaatggaacggaacggaacagaacagaacagaaataaaacaataaaaatcat 244
                                  |||||||||||||||||||||||||||||||||||||
Sbjct: 408 -----------------------gaacagaacagaacagaaataaaacaataaaaatcat 444

                                                                       
Query: 245 caccaacacgattatcattggttgcaggaggctatttccatgcaagcatattatttctcc 304
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 445 caccaacacgattatcattggttgcagaaggctatttccatgcaagcatattatttctcc 504

                                                                       
Query: 305 agattctctcccctcccttctcccttccccctctgttgttccag-ttatttcctctgttc 363
           | |||||||||||||||||||||||||||||||| || |||| | |||||||||||||||
Sbjct: 505 atattctctcccctcccttctcccttccccctcttttcttcc-gattatttcctctgttc 563

                                                                       
Query: 364 cctggacagtatcacttccactttctttctttcttcctttctttctttccttcttactta 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cctggacagtatcacttccactttctttctttcttcctttctttctttccttcttactta 623

                                         
Query: 424 taccttctttctttcttgctttctttcttt 453
           ||| ||||||||||||| ||||||||||||
Sbjct: 624 tactttctttctttctttctttctttcttt 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)