BAC Information

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BAC

Clone NameMSMg01-537O22
Chromosome7 (Build37)
Map Location 103,947,031 - 103,947,531
singlet/doubletsinglet
Overlap geneOdz4
Upstream geneFrda-ps, EG666836, LOC670727, LOC666858
Downstream geneNars2, Gab2, LOC100040457, Usp35, EG622320, Alg8, Ndufc2, Thrsp, Kctd14, Ints4, 1810020D17Rik, Rsf1, LOC622994, LOC100040211, Clns1a, Aqp11, LOC100040594
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537O22.T7 (MSMg01no537_o22.b1)MSMg01-537O22.TJ (MSMg01no537_o22.g1)
ACCAG604784AG604785
length749765
length of high quality
(start - end)
668 (50 - 717)552 (81 - 632)
definitionCHROMAT_FILE: MSMg01no537_o22.b1 PHD_FILE: MSMg01no537_o22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:26 2005CHROMAT_FILE: MSMg01no537_o22.g1 PHD_FILE: MSMg01no537_o22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCTAAGAACTGTCTAAATTCCATTTGCATTTGTTGTAATAT
TCCTTGCCTCATTCCTAGTTTTATTGATTTGAGTCCTCTCTCTTTCTTCT
GGCTAGACCAGGGCAGACCAGGCCCTATACTCAGTAACCTGGCCCACCTG
TAGCATGCTCCAGTTCTGCTGAGAGTTTGTCAAAGAACTGGCTCATAGTT
TCATTGATTCTTTGTGTTGTCCCTTAGTCCCCATTTTACTAATAGCTGTC
CCAATCTTATCTCTTATTGAACACTATTAAGTAAATAAATGTTACTGTTA
GGCATGCATTACAGTATAAATCAGAGTCCTTCTGACTGCTGAGAAGCTTG
CTAAGTCACTAATGGGCAGGACAGATGGATGGAGGACATTTATCATCCTG
GGGAAGACATAGAGGGTTAGCATGAGATTTCATCACATTTCTCAGAATCC
TGTGCTGCAGGAGTCATTTGTTTCTAGACTTCTTCATTTATGTCCTCAAG
CCTTGGTCGAGCATAGGTATCAGAAGCCACAGAAAAATGAAACTGTAACT
AANAGGACTGACTGTGCCAGTNCCAGACATAGTGGCAGTGTTAGTGGTGA
CAACAGCCGCAGCATTATGCTGGTATATCTCCTTTCCTTCCTTCTTTCCT
TAAATATACCTTCCTGAAAGTCAGAGTCTACTAAGATTAAGTCTACACG
NNGGGGCCATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGGCAGCCCTGAAGTAGG
CTGACATCATCATACAGAAGCTGTCAGGTAGCATACAGTGAGATGGGATG
ATAGTGAGATAGTCCGCTGTGTATCACCAATCTGAAGGGGATATGTGAGA
AATGTGGGCTGAAGCAAAGTGGGAGGACTCTGAGCCATACTTGACAAACT
GCCCGGGCTCTGGGCATCTGGACAGGACCGGAGCTGGATGCCTGGTAGTC
ACCTGGGCACCATCTGTAAGGGCTGTAGGGCAAACAGCTGGAAAGGGGGA
AAAAATCAAGCTTCTAATTCTTGTTTTTAAAAAGTTAGATGACCTTTCCT
CTCAGGTCTCTGAGAAAAAAGAAAATAATCCATCCCTCTTTGCATTGTTA
GAAGTGTAAAATAATGCAGTTAAGGCCTTGGGCACAGTGCTTGACACATC
GTAAATACTCAAAAATTAGGAGCCATTATTGTTAATAAATATAATGTGTT
CCATAGCTGTTTATTGACTTGGTGATATTGCAAGGGACCAACGACGTGAA
GTAATGGCGAAACAGAAAGAACGGATGCAAGATAGCACCATTTGCTTAAA
ACTCCTTTGTCTCTCAAAAGCTAGGGTTTTTCCTGCCATTTCTGTGAGAC
CCAAGAAGTCAGTTTCTACGCTGAGAGGCACCTGGAATCTGCCTNATAAA
AGCCATGTGCTTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_o22.g1 MSMg01no537_o22.g1 CHROMAT_FILE:
MSMg01no537_o22.g1 PHD_FILE: MSMg01no537_o22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:27 2005
         (552 letters)



>mm_chr7_103947031_103947982
          Length = 952

 Score =  946 bits (489), Expect = 0.0
 Identities = 498/501 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaggcagccctgaagtaggctgacatcatcatacagaagctgtcaggtagcatacagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaggcagccctgaagtaggctgacatcatcatacagaagctgtcaggtagcatacagtg 442

                                                                       
Query: 61  agatgggatgatagtgagatagtccgctgtgtatcaccaatctgaaggggatatgtgaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 441 agatgggatgatagtgagatagtccgctgtgtatcaccaatctgaaggggatatgtgagg 382

                                                                       
Query: 121 aatgtgggctgaagcaaagtgggaggactctgagccatacttgacaaactgcccgggctc 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 aatgtgggctgaagcaaagtgggaggactctgagccatactagacaaactgcccgggctc 322

                                                                       
Query: 181 tgggcatctggacaggaccggagctggatgcctggtagtcacctgggcaccatctgtaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggcatctggacaggaccggagctggatgcctggtagtcacctgggcaccatctgtaag 262

                                                                       
Query: 241 ggctgtagggcaaacagctggaaagggggaaaaaatcaagcttctaattcttgtttttaa 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctgtagggcaaacagctggaaagggggaaaaaatcaagcttctaattcttgtttttaa 202

                                                                       
Query: 301 aaagttagatgacctttcctctcaggtctctgagaaaaaagaaaataatccatccctctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagttagatgacctttcctctcaggtctctgagaaaaaagaaaataatccatccctctt 142

                                                                       
Query: 361 tgcattgttagaagtgtaaaataatgcagttaaggccttgggcacagtgcttgacacatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 tgcattgttagaagtgtaaaataatgcagttaaggccttgggcacagtgcttgacacatc 82

                                                                       
Query: 421 gtaaatactcaaaaattaggagccattattgttaataaatataatgtgttccatagctgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81  gtaaatactcaaaaattaggagccattattgttaataaatataatgtgttccatagctgt 22

                                
Query: 481 ttattgacttggtgatattgc 501
           |||||||||||||||||||||
Sbjct: 21  ttattgacttggtgatattgc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)