Query= MSMg01no538_e06.b1 MSMg01no538_e06.b1 CHROMAT_FILE:
MSMg01no538_e06.b1 PHD_FILE: MSMg01no538_e06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:52 2005
(643 letters)
>mm_chr7_141621258_141622296
Length = 1039
Score = 864 bits (447), Expect = 0.0
Identities = 529/559 (94%), Gaps = 8/559 (1%)
Strand = Plus / Minus
Query: 87 ttaaaaggcactgataataagataatactaaaagagagcacgtggatccacacaccagac 146
|||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 1039 ttaaaaggcacttataataagataatactaaaagagagcttgtggatccatacaccagac 980
Query: 147 taacttgggaatagaatatgagtatatgggttaaagagaacgccagactccaggaggtga 206
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 979 taactcgggaatagaatatgactatatgggttaaagagaacgccagactccaggaggtga 920
Query: 207 gtttccgtgaaacactctgcctcttaagtggcttctaggcctctcggcttgtcaagctga 266
||||||||||||| |||| |||| | ||||||||| || |||||||||||||||||||||
Sbjct: 919 gtttccgtgaaactctctacctcgtgagtggcttccagacctctcggcttgtcaagctga 860
Query: 267 ctcgaccggagtgcgtggcagaattaaacatctgggaaagacagaatgaccaatccatgg 326
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 859 ctcgacgggagtgcgtggcagaattgaacatctgggaaagacagaatgaccaatccatgg 800
Query: 327 gaaagggggaataatagctttatttctttaggatgggaagagctcctaagactaggagtc 386
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 799 gaaagggggaataatagctttatctctttaggatgggaagagctcctaagattaggagtc 740
Query: 387 tt-taaactggtggttggtttgggtatttaatagggcccctggaccagcgccttttccta 445
|| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 739 ttctaaactggtgtttggtttgggtatttaatagggcccctggaacagcgccttttccta 680
Query: 446 ttgatcctgtttatagcctcgccccttgccttcctgctgcttctccttacaataatgcct 505
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ttgatcctgtttatagccccgccccttgccttcctgctgcttctccttacaataatgcct 620
Query: 506 tctgagaacaagaagacttcatctcaggagcagacttctttatcttctttatcttgtctg 565
||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||
Sbjct: 619 tctgagaacaagaagacttcatcgcaggagcagacttct----c--ctttatcttgtctg 566
Query: 566 cctacatctccctaacttcccgtcaagagtgcgattattgtcagtagtcagctcagtgag 625
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 565 cctacatctccctaacttcccttcaagagtgcaattattgtcagtagtcagctcagtgag 506
Query: 626 gg-tgccctgtctcccagt 643
|| ||||||||||||||||
Sbjct: 505 gggtgccctgtctcccagt 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1039
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1029
Effective search space: 651357
Effective search space used: 651357
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_e06.g1 MSMg01no538_e06.g1 CHROMAT_FILE:
MSMg01no538_e06.g1 PHD_FILE: MSMg01no538_e06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:52 2005
(622 letters)
>mm_chr7_141479638_141480659
Length = 1022
Score = 1187 bits (614), Expect = 0.0
Identities = 620/622 (99%)
Strand = Plus / Plus
Query: 1 catgtctctactggtccgtgatttggaaggctctgacttggctcaccttgggaggtgtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgtctctactggtccgtgatttggaaggctctgacttggctcaccttgggaggtgtgg 260
Query: 61 ataacccaattcagatgaagtccatctgatctgtgagatacagcggggaggctggtgagc 120
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 ataactcaattcagatgaagtccatctgatctgtgagatacagcggggacgctggtgagc 320
Query: 121 catgtgagccatgtgatcacccatgcttcccgtctgggtacagtcccccagcactctgac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catgtgagccatgtgatcacccatgcttcccgtctgggtacagtcccccagcactctgac 380
Query: 181 aagtgggagatgtgtaagtaaataagaaccccaattttgcaaatagcaatgggagcattg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagtgggagatgtgtaagtaaataagaaccccaattttgcaaatagcaatgggagcattg 440
Query: 241 aagaaggagaggcttagggaagcagatgcgtcgggtggatttttctgcatgcctaaggat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagaaggagaggcttagggaagcagatgcgtcgggtggatttttctgcatgcctaaggat 500
Query: 301 gagatgcacaacttaattgaattagatgtggaaggaggagagtatggggaaggagctaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagatgcacaacttaattgaattagatgtggaaggaggagagtatggggaaggagctaaa 560
Query: 361 gtagcagtcaggccatgtggctatgtcgggtccctgccaggtcgaggcttaacaccaaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtagcagtcaggccatgtggctatgtcgggtccctgccaggtcgaggcttaacaccaaga 620
Query: 421 taagagtaaagacacatgtttaagaaagaactgggtggaaaagcaaaagcctctacacac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taagagtaaagacacatgtttaagaaagaactgggtggaaaagcaaaagcctctacacac 680
Query: 481 accaggccacctgtcaaggtaaagagtttagaggtaagtgtttaaaaaggctggatgtga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 accaggccacctgtcaaggtaaagagtttagaggtaagtgtttaaaaaggctggatgtga 740
Query: 541 ggtcaggcagggtgccatattaagtgtcgagtcatctcttcaggagttaagatagaaagt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggtcaggcagggtgccatattaagtgtcgagtcatctcttcaggagttaagatagaaagt 800
Query: 601 gagattaactagggagccggag 622
||||||||||||||||||||||
Sbjct: 801 gagattaactagggagccggag 822
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space: 619344
Effective search space used: 619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
