BAC Information

Click to search

BAC

Clone NameMSMg01-538E15
Chromosome7 (Build37)
Map Location 127,298,663 - 127,298,982
singlet/doubletsinglet
Overlap genenone
Upstream geneGpr139, LOC100042871, Gp2, Umod, 1700007B13Rik, C730027J19Rik, Acsm2, Acsm1, BC048390, Thumpd1, EG434233, Acsm3, Exod1, 2610020H08Rik, Dcun1d3, LOC100043399, LOC100043396, Lyrm1, Dnahc3, Tmem159, Zp2
Downstream geneAnks4b, Crym, Abca14, Abca15, Abca16, LOC668429, LOC546994, LOC100042914, E130201H02Rik, LOC637957, Uqcrc2, 4930408O21Rik, BC030336, E030013G06Rik, EG436008, LOC100043426, Eef2k, Polr3e, Cdr2, 4933427G17Rik, EG668548, Mettl9, LOC668456, Igsf6, Otoa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-538E15.T7 (MSMg01no538_e15.b1)MSMg01-538E15.TJ (MSMg01no538_e15.g1)
ACCAG605054AG605055
length740746
length of high quality
(start - end)		694 (35 - 728)639 (65 - 703)
definitionCHROMAT_FILE: MSMg01no538_e15.b1 PHD_FILE: MSMg01no538_e15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:54 2005CHROMAT_FILE: MSMg01no538_e15.g1 PHD_FILE: MSMg01no538_e15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCGCTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTT
CAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCCA
CCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTTA
GGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTCTTTGTCTTATT
AACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATT
TGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAAT
TTTTCCCCTGTGCCCATATCTTCAAGGCTTTCCCCCACTTTCTCCTCTAT
AAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTTGATCCATTTAGATT
TGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTTCTACAT
GATAACCAACAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTCTT
CCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGTGT
GTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCTG
TCTCTATACCAGTACCATGCAGTTTTTACCACAATTGCTCTGTAGTAAAG
CTTTAGGTCAGGCATGGTGATTCCACTAGAGGTTCTTTTATCCTTGAGAA
GAGTTTTTGCTATCCTAGGTTTTTTGTTATTCCAGATGAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTGCACAATTGACAAAATGAGCTGTTAAGGTCACCT
ATATGGAAACAATATTCCTTTTATACAGAGATCTCACATGAGGATGCTAA
AGTGGCAAAGAGACATGCTTAGGGCCTAGGCATGTGTGATGGTTTGTATA
TGCTTGTCCTAACGAGGGGCACTATTTGGAGGTGTGGCCTTGTAGGAGTA
GGTGTGTCACTGTGGGTATGGGCTTTAAGACCCTACTCCTAGCTGCCTGA
AAGCCAGTATTCTGCTAGCAGCTATTCAGATGAAGACGTAGAACTCTCCA
CTCCTCCTGCATCATGCCTGCCTGGATGCTGCCATGTTCCAGCCTTGATG
ATAATGGACTGAACCTCTGAACATATAAGCCAGCCCCAAATATATGTTGC
CCTTTTAAAGACTTGCCTTGGTCATGATGTCTGTTCACATCAATAAAACC
CTAACTAACACAGCATGTAAGACCTTTCTCCATTCCTAGATGAAAACCTG
CAACCTCCTGAAAATTTCACAAACAAAACTATACATTTCATTAATAGGGA
AAATAAAAGTATTTTTAATTGAAAATAGATTCTTCTTTCATATCCCGACC
TCAGTTTCCTTCCCTCCACTCCTCCCAGNCTCACCTCCTCCTTTCCTCTT
CTCCCAGATCCACTCCTTCTCCATCTCCACTTCAGAAAAGAGCAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no538_e15.g1 MSMg01no538_e15.g1 CHROMAT_FILE:
MSMg01no538_e15.g1 PHD_FILE: MSMg01no538_e15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:54 2005
         (639 letters)



>mm_chr7_127298663_127299701
          Length = 1039

 Score =  551 bits (285), Expect = e-161
 Identities = 312/321 (97%), Gaps = 1/321 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgcacaattgacaaaatgagctgttaaggtcacctatatggaaacaatattccttttat 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 320 ctgcacaattgacaaaatgagctgttacggtcacctatatggaaacaatattccttttat 261

                                                                       
Query: 61  acagagatctcacatgaggatgctaaagtggcaaagagacatgcttagggcctaggcatg 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 260 acagagatctcacatgaggatgctaaagtggcaatgagacatgcttagggcctaggcatg 201

                                                                       
Query: 121 tgtgatggtttgtatatgcttgtcctaacgaggggcactatttggaggtgtggccttgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tgtgatggtttgtatatgcttgtcctaacgaggggcactatttggaggtgtggccttgta 141

                                                                       
Query: 181 ggagtaggtgtgtcactgtgggtatgggctttaagaccctactcctagctgcctgaaagc 240
           ||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 140 ggagtgggtgcgtcactgtgggtgtgggctttaagaccctactcctagctgcctgaaagc 81

                                                                       
Query: 241 cagtattctgctagcagctattcagatgaagacgtagaactctccactcctcctgcatca 300
           ||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||
Sbjct: 80  cagtattctgctagcagc-cttcagatgaagaggtagaactctccactcctcctgcatca 22

                                
Query: 301 tgcctgcctggatgctgccat 321
           ||||||||| |||||||||||
Sbjct: 21  tgcctgcctagatgctgccat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |