Query= MSMg01no538_n23.b1 MSMg01no538_n23.b1 CHROMAT_FILE:
MSMg01no538_n23.b1 PHD_FILE: MSMg01no538_n23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:37 2005
(620 letters)
>mm_chr7_135432409_135433426
Length = 1018
Score = 1122 bits (580), Expect = 0.0
Identities = 608/618 (98%), Gaps = 4/618 (0%)
Strand = Plus / Plus
Query: 4 ggaattctttagctgcttttcccctccccagaaactgggtgacaccctcctgcagctctc 63
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 204 ggaattctttagctgcttttcccctccccagaaactgggcgacaccctcctgcagctctc 263
Query: 64 tgataacagcagggaagaaaggccttgtagcccttctcaactcagctgcaagataagttc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgataacagcagggaagaaaggccttgtagcccttctcaactcagctgcaagataagttc 323
Query: 124 acagtccgatctagtgctagctccatttcccttagcaaaagactgggccaaactaagtca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acagtccgatctagtgctagctccatttcccttagcaaaagactgggccaaactaagtca 383
Query: 184 catggtgtagaacttctaccacgcctctgaaaaaatcaatgaaggtcagattgctgcttg 243
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 384 catggtgtagatcttctaccacgcctctgaaaaa-tcaatgaaggtcagattgctgcttg 442
Query: 244 ggagacttgaggttttcccctttggcgccccccctgccccc-gcacccctttattacact 302
| |||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 443 gcagacttgaggctttcccctttggcgccccc--tgccccccgcacccctttattacact 500
Query: 303 gcacatggctgccacctctcctcacctcactcctctctgggttttgaagggaaggcctgc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcacatggctgccacctctcctcacctcactcctctctgggttttgaagggaaggcctgc 560
Query: 363 tcccttcagttggagccccaccatgctgtccttggcaggatgttatatgtttcctaagtg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcccttcagttggagccccaccatgctgtccttggcaggatgttatatgtttcctaagtg 620
Query: 423 gtctcctactgcaaggtgggaagcgctctcatgatgaagctctcctgaaaggtgattttc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtctcctactgcaaggtgggaagcgctctcatgatgaagctctcctgaaaggtgattttc 680
Query: 483 tatctgcctctctgaccagtgttttgttccaatattcccagtcccctgaaatatgatcct 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatctgcctctctgaccagtgttttgttccaatattcccagtcccctgaaatatgatcct 740
Query: 543 tagctgggaaggtcttcagtgagtgctgggtatctcacccgtactggctctgaggaaaaa 602
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 741 tagctgggaaggtcttcagtgagtgctgggtatctcgcccgtactggctctgaggaaaaa 800
Query: 603 ctctgtttattgacagtt 620
|||||||||||||||||
Sbjct: 801 ttctgtttattgacagtt 818
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1018
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1008
Effective search space: 614880
Effective search space used: 614880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_n23.g1 MSMg01no538_n23.g1 CHROMAT_FILE:
MSMg01no538_n23.g1 PHD_FILE: MSMg01no538_n23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:38 2005
(511 letters)
>mm_chr7_135656446_135657357
Length = 912
Score = 857 bits (443), Expect = 0.0
Identities = 495/515 (96%), Gaps = 7/515 (1%)
Strand = Plus / Minus
Query: 1 cataaaatccctccctccctccctttc-ccgccccctccctcctctgcttctctgggaaa 59
||||||||||||||||||||||| ||| | ||||||||| ||||||||||||||||||||
Sbjct: 754 cataaaatccctccctccctccc-ttctctgccccctccttcctctgcttctctgggaaa 696
Query: 60 ccttgactaactgcaaatgagttgcagtgatcatcagaggctgtaactggagtttttagg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ccttgactaactgcaaatgagttgcagtgatcatcagaggctgtaactggagtttttagg 636
Query: 120 ggaaaagcacggactcacacagctccaaaagagctaaggacctgccgtctgccgcccagc 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 635 ggaaaagcacggactcacacagctccaaaagagctaaggacctgccgtctgccggccagc 576
Query: 180 acaacacaccagttttagagacaagtgagcatggaaagtagggaaaggcaattgattcag 239
|||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||
Sbjct: 575 acaacacaccagttttagagacaagtgagcgtggaaagcagagaaaggcaattgattcag 516
Query: 240 agtgacagtgtcgggaagttggggcggg---gggagggggagactaaggggggccagtga 296
|||||||||||||||||||||||||||| ||| ||||||| ||||||||| |||||||
Sbjct: 515 agtgacagtgtcgggaagttggggcgggcgggggggggggaggctaagggggtccagtga 456
Query: 297 gctggagttcatcttctgagcactgactcgaagtttaggtttaaatagagaaaggatggg 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gctggagttcatcttctgagcactgactcgaagtttaggtttaaatagagaaaggatggg 396
Query: 357 ggtgaaggtggganttggggaggatttctgcnattggttcagtctggttgggcattgtgt 416
| ||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 395 gttgaaggtgggagt--gggaggatttctgcaattggttcagtctggttgggcattgtgt 338
Query: 417 cagttctgcaaggtggtctgaagaagttcttgtcatgccttgggggacttggggacacaa 476
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 cagttccgcaaggtggtctgaagaagttcttgtcatgccttgggggacttggggacacaa 278
Query: 477 tctggttctcagtagtggtcacttctgtttcaggg 511
|||||||||||||||||||||||||||||||||||
Sbjct: 277 tctggttctcagtagtggtcacttctgtttcaggg 243
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 912
Length adjustment: 10
Effective length of query: 501
Effective length of database: 902
Effective search space: 451902
Effective search space used: 451902
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
