NNCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCATGATATATTCAAACTTGATTTACTTGCTTTTAGATGAAG
ACACAGACATACATTTTCTCATTTAGAGGATTAGGTAGAGAAAGACCATT
TCCTGTCCTTTCCTTTCCCAGAATCATTTATCTTTCAAGCTGCTACAGAT
TTCTACTGCACGATGGCAGCTGCTGTAAGAAATGGGGAGGGTGTGGGGCC
TCACATAGTGCCACGTTTCATCTCTCATCTGGCTATCTTTATCCACTCAC
AGATCTGAGCCTTTAATAATGCCTTACTATGCTCAAATCCTTCACACAGG
AATGAGGTAGGAGAGTTGAATGGTTTCTTTCCTCCCTCCTATCTATGTAC
AGTCTGCGTGTACGTGCATACATGTGTGTATGTTTTTATGTCAGAGGTTG
ACATCAAATAGTTTTGATAGCCTTATTTTGTGAGATATTCTCTGAGCCTA
GACTTCACTGATCACCCAGGGAGGTCCAGATATCTGACTATGTCAGGTCC
CACTGTATAGGGATAAAGGCACAGGAATACATTTGAACTTTTTGATAACA
CAGGTGCTAGGGATCCAGAGTTATGTCCTCATGTTGTAGAGCCAAGCTAA
GCCATATTCTCAACTCCCAGTTTCTCTTTGTGATATAAAGACATAAACAT
ATGGGGAGCTAANGGAATTTCTGAATTCTCTTGGCTAGTCATGACACAGA
AATGATACCCTGATAATCN

NNGGGATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTAAGCTCTGCACCCC
ATTTTTTAATGGGGTTATTTGATTTTCTGGAGTGCACCTTCTTGAGTTCT
TTATATATATATATTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAA
AGATACTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACGGTGTCT
TTTGCCTTACAGAAGCTTTGCAATTTTATGAAGTCCCATTTGTCGATTCT
CAATCTTACAGCACAAGCTATTGCTGTTCTATTCAGGAAATTTTCCCCTG
TGCCCTTATCTTCGAGGCTTTTCCCCACTTTCTCCTCTATAAATTTCACT
CTCTCTATAAATTTCACTCACTCACTCACTCACTCACTCTCTTACTCACT
CACTCTCTCACTCACTCAAGAAGGTGGACTCCTGAAAATCAAATAACCCC
ATTATTTATGGGGCTCATATGCTTTTCTTATTTCTTCTCCGAGTTATATT
GAATGGTTGTATATATACCTGATAACTTGTTTCTTTATCTTTAACTCTCT
CCGCCAATGTTTTACTTTTTTCTTCCTGTATATTCCCCCTTCCTTCCTCT
CTCATATGTCTTACCATTTTTTATCTTCTGTGCTACCTTTTTACGCCTGT
TGTTTTTAGCGGTAGTATACGCTTTACCTTCTCTTGTCTTTGGGCCGTTT
TGATTTCTCCCTCTCTTGCGTATTCTTCCCTTCTG

Query= MSMg01no539_l11.b1 MSMg01no539_l11.b1 CHROMAT_FILE:
MSMg01no539_l11.b1 PHD_FILE: MSMg01no539_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:46 2005
         (585 letters)



>mm_chr7_65602859_65603843
          Length = 985

 Score = 1108 bits (573), Expect = 0.0
 Identities = 579/581 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatgatatattcaaacttgatttacttgcttttagatgaagacacagacataca 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 gaattccatgacatattcaaacttgatttacttgcttttagatgaagacacagacataca 726

                                                                       
Query: 65  ttttctcatttagaggattaggtagagaaagaccatttcctgtcctttcctttcccagaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ttttctcatttagaggattaggtagagaaagaccatttcctgtcctttcctttcccagaa 666

                                                                       
Query: 125 tcatttatctttcaagctgctacagatttctactgcacgatggcagctgctgtaagaaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 tcatttatctttcaagctgctacagatttctactgcacgatggcagctgctgtaagaaat 606

                                                                       
Query: 185 ggggagggtgtggggcctcacatagtgccacgtttcatctctcatctggctatctttatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ggggagggtgtggggcctcacatagtgccacgtttcatctctcatctggctatctttatc 546

                                                                       
Query: 245 cactcacagatctgagcctttaataatgccttactatgctcaaatccttcacacaggaat 304
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgctcacagatctgagcctttaataatgccttactatgctcaaatccttcacacaggaat 486

                                                                       
Query: 305 gaggtaggagagttgaatggtttctttcctccctcctatctatgtacagtctgcgtgtac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gaggtaggagagttgaatggtttctttcctccctcctatctatgtacagtctgcgtgtac 426

                                                                       
Query: 365 gtgcatacatgtgtgtatgtttttatgtcagaggttgacatcaaatagttttgatagcct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gtgcatacatgtgtgtatgtttttatgtcagaggttgacatcaaatagttttgatagcct 366

                                                                       
Query: 425 tattttgtgagatattctctgagcctagacttcactgatcacccagggaggtccagatat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tattttgtgagatattctctgagcctagacttcactgatcacccagggaggtccagatat 306

                                                                       
Query: 485 ctgactatgtcaggtcccactgtatagggataaaggcacaggaatacatttgaacttttt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ctgactatgtcaggtcccactgtatagggataaaggcacaggaatacatttgaacttttt 246

                                                    
Query: 545 gataacacaggtgctagggatccagagttatgtcctcatgt 585
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gataacacaggtgctagggatccagagttatgtcctcatgt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)