Query= MSMg01no540_n11.b1 MSMg01no540_n11.b1 CHROMAT_FILE:
MSMg01no540_n11.b1 PHD_FILE: MSMg01no540_n11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:16 2005
(615 letters)
>mm_chr7_36838087_36839102
Length = 1016
Score = 1091 bits (564), Expect = 0.0
Identities = 603/616 (97%), Gaps = 1/616 (0%)
Strand = Plus / Minus
Query: 1 gccagtccacagaccagtcctcctgcgacctccgtgtgagtccagtgatttaaaaccttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 gccagtccacagaccagtcctcctgcgacctccgtgtgagtccagtgatttaaaaccttg 757
Query: 61 gtggacagattagccacacctggttccctccgcgaggaggaggagaattacagccataga 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 756 gtggacagattagccacacctggttccctcctcgaggaggaggagaattacagccataga 697
Query: 121 cataagacagagaagttgcaggaggatgtcccaattaaggaccgtcctgcacaggtaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 cataagacagagaagttgcaggaggatgtcccaattaaggaccgtcctgcacaggtaatt 637
Query: 181 tgaggggaagatcagggagaataaaactgtccctcatttgtccttccagaaaagcattct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 636 tgaggggaagatcagggagaataaaactgtccctcatttgtccttccagaaaagcatcct 577
Query: 241 acactcaccccaacctgtgatacctgcatcacacaagagcatactggaatgggggtgggt 300
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 576 acactcaccccaacctgtgatacctgcatcacacaagagcagactgggatgggggtgggt 517
Query: 301 gagcttgttcctgaacttgtcaggtgatagga-acaggcagcatgattgctagtcttcac 359
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 516 gagcttgttcctgaacttgtcaggtgataggacacaggcagcatgattgctagtcttcac 457
Query: 360 tttatccagtaataaatacattcaaagtaaaaatatatttgtaccatgcattttaccctc 419
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 456 tttatccggtaataaatacattcaaagtaaaaatacatttgtaccatgcattttaccccc 397
Query: 420 acatagaacataccaggttcgatatgacttttgctaattatttacattgtagtctcaggg 479
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 396 acatagaacataccgggttcgatctgacttttgctaattatttacattgtagtctcaggg 337
Query: 480 tggccaagagaatgcacatgcatcctcccataagattctgtgtcattaatattcttttaa 539
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tggccaacagaatgcacatgcatcctcccataagattctgtgtcattaatattcttttaa 277
Query: 540 catttgctaggttcctgtctaagactgactgcaatgacggctactgcccatggcagtgga 599
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 276 catttgctaagttcctgtctaagactgactgcaatggcggctactgcccatggcagtgga 217
Query: 600 aacaataggaaaatct 615
||||||||||||||||
Sbjct: 216 aacaataggaaaatct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1016
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1006
Effective search space: 608630
Effective search space used: 608630
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no540_n11.g1 MSMg01no540_n11.g1 CHROMAT_FILE:
MSMg01no540_n11.g1 PHD_FILE: MSMg01no540_n11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:16 2005
(602 letters)
>mm_chr7_36682302_36683303
Length = 1002
Score = 1149 bits (594), Expect = 0.0
Identities = 600/602 (99%)
Strand = Plus / Plus
Query: 1 ttaatgcctcttttgagaactgtgttctgttcatttgcccgtgattggtttgagattatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaatgcctcttttgagaactgtgttctgttcatttgcccgtgattggtttgagattatg 260
Query: 61 ttttcttaaatttattttatatgtattagtgtgtgcccaggggaatttatgtgcacccca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttcttaaatttattttatatgtattagtgtgtgcccaggggaatttatgtgcacccca 320
Query: 121 tgtgtgcagtgttcatgaaggccagagagggcgttagttctgaaattagagttacaggca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgtgcagtgttcatgaaggccagagagggcgttagttctgaaattagagttacaggca 380
Query: 181 gttatgagccactgtgttgggtgctgggaacaaagtcaagtcctctggaagagcagccag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttatgagccactgtgttgggtgctgggaacaaagtcaagtcctctggaagagcagccag 440
Query: 241 tactcttaaagtctaagccatctctccagctcctcattcattaagttgatcatttgaaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tactcttaaagtctaagccatctctccagctcctcattcattaagttgatcatttgaaat 500
Query: 301 tttggtgttttattcttgagttctttacatattctacatatcaatcccgcatgggatctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttggtgttttattcttgagttctttacatattctacatatcaatcccgcatgggatctg 560
Query: 361 tgaagagagccacccccaccctgtcccctgcaggttttcccttcaccctggtcattattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaagagagccacccccaccctgtcccctgcaggttttcccttcaccctggtcattattt 620
Query: 421 cctttgctgagaagaaggcttttggcttggtggggatgccattcatttactataaacctt 480
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 cctttgctgagaagaaggcttttggcttggtggggatgccattcatttaccataaacctt 680
Query: 481 gggatggataggttttctgttaatgaatggaaagaccagactggggcccccaaccctgca 540
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 681 gggatggataggttttctgttaatgaatggaaagaccacactggggcccccaaccctgca 740
Query: 541 cccagttgtcctagagtctttgtgccttttctgttacacagactggtatcaggatgctgg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cccagttgtcctagagtctttgtgccttttctgttacacagactggtatcaggatgctgg 800
Query: 601 tt 602
||
Sbjct: 801 tt 802
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space: 587264
Effective search space used: 587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
