Query= MSMg01no540_p18.b1 MSMg01no540_p18.b1 CHROMAT_FILE:
MSMg01no540_p18.b1 PHD_FILE: MSMg01no540_p18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:27 2005
(619 letters)
>mm_chr7_117529912_117530930
Length = 1019
Score = 1166 bits (603), Expect = 0.0
Identities = 612/615 (99%)
Strand = Plus / Plus
Query: 5 gaattcactgttcacttactacgtgcctgccactctaacgggcgctttatgtttaccacc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactgttcacttactacgtgcctgccactctaacgggcgctttatgtttaccacc 264
Query: 65 cgcttctgtctttactgatcacaatcccagacatttgtttaagatttcagaataagctgg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cgcttctgtctttactgatcacaatcccagacatttgtttaagatttcagaataagctgg 324
Query: 125 aattcaaattcacatctagttcccattttagggctttccacttatatcttcgttccattg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aattcaaattcacatctagttcccattttagggctttccacttatatcttcgttccattg 384
Query: 185 ctatttctgtgaagagacgccatgactaaggcaacttacaaaagataagagcttattagg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctatttctgtgaagagacgccatgactaaggcaacttacaaaagataagagcttattagg 444
Query: 245 ggcttgcttacaattttggagggttaggctacgatcatcatggcaggaagcatggcagca 304
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 445 ggcttgcttacaattttggagggttgggctacgatcatcatggcaggaagcatggcagca 504
Query: 305 ggcataaccttggagcagtagctgatagcttacacgttaagagaacaaccacaagtcaga 364
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 505 ggcataaccttggagcagtagctgatagcttacacattaagagaacaaccacaagtcaga 564
Query: 365 gagatagatccaactggaagttgtatgaagttttgaagcctcaaagcccacctcagtgat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gagatagatccaactggaagttgtatgaagttttgaagcctcaaagcccacctcagtgat 624
Query: 425 gacaccaatccaacaaggccaccctggggactaagtattgaaatataggagcctatggta 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gacaccaatccaacaaggccaccctggggactaagtattgaaatataggagcctatggta 684
Query: 485 acattctcaattcaaaccaccagacctactataatacaccataagaatttatagtcagag 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acattctcaattcaaaccaccagacctactataatacaccataagaatttatagtcagag 744
Query: 545 ttaaaagtgagaggctgtgaagctaacatcgtatcagctgaatgtagctgcacattttgt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttaaaagtgagaggctgtgaagctaacatcgtatcagctgaatgtagctgcacattttgt 804
Query: 605 tttgcttatttaaga 619
|||| ||||||||||
Sbjct: 805 tttggttatttaaga 819
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space: 614481
Effective search space used: 614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no540_p18.g1 MSMg01no540_p18.g1 CHROMAT_FILE:
MSMg01no540_p18.g1 PHD_FILE: MSMg01no540_p18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:27 2005
(644 letters)
>mm_chr7_117557904_117558946
Length = 1043
Score = 1170 bits (605), Expect = 0.0
Identities = 635/645 (98%), Gaps = 3/645 (0%)
Strand = Plus / Minus
Query: 1 aatagcaggctagacatctgtgttgatattttaagaaagaaacaaaaactaaatgaacta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 aatagcaggctagacatctgtgttgatattttaagaaagaaacaaaaactaaatgaacta 784
Query: 61 aattttagttagtgattcaaacacttagtaatgtttcctttcatgacctagaaattagtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 aattttagttagtgattcaaacacttagtaatgtttcctttcatgacctagaaattagtc 724
Query: 121 tctttcttgccctcaagggaaaaccaaagggaacatgagtactgccaaacaactgctttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 tctttcttgccctcaagggaaaaccaaagggaacatgagtactgccaaacaactgctttg 664
Query: 181 tttatcgggctctttcaaagccaatataattttgtcacagcactgttttatacagggtat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 tttatcgggctctttcaaagccaatataattttgtcacagcactgttttatacagggtat 604
Query: 241 aattacttcctacataacatctcatttcaaaaaatggatcatatttttttcaaaacaagg 300
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 603 aattacttcctacataacatctcatttcaaaagatggatcata-ttttttcaaaacaagg 545
Query: 301 gttaccaaaaaaatcatgacttgaacctctatttaaaattttttattatgtctagaatct 360
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 544 gtta-taaaaaaatcatgacttgaacctctctttaaaattttttattatgtctagaatct 486
Query: 361 aactactgtgttttaacaataaattttgacttgaaaacccactgaagttctctacttctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactactgtgttttaacaataaattttgacttgaaaacccactgaagttctctacttctc 426
Query: 421 tcattatgttaaacttcattctatgaggagcccactcatcaacacagaaaagtaccttag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tcattatgttaaacttcattctatgaggagcccactcatcaacacagaaaagtaccttag 366
Query: 481 aaaattccaaataaacataaatgacgattttgatacacagttcctcttatgaagtagaga 540
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 365 aaaattccaaataaacataaatgacgattttgatacacaattcctcttatgaagtagaga 306
Query: 541 tctccaaatacattttcctgtatgcttaagaaagaacaagtagacaagccaaacactaaa 600
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 305 tctccaaatacatttccctgtacgcttaagaaagaacaagtagacaagccaaacactaaa 246
Query: 601 catcaacaggttttaaagtctctttttaaa-gatttattattatg 644
||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 245 catcagcaggttttaaagtctctttttaaaagatttattattatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1043
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1033
Effective search space: 654922
Effective search space used: 654922
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
